Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03553 ATGGAGGAATCTCAGTACTTGATGTGGATGAAGCGAAAACAAATCTTGAAGTCACATATTCAAGCACCATTTGGAGGCTGCAACAACAGCTCTTGGGAAGAAAAGGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGATGCATGTGGCCTCCAAGATCTTACTCATGTCACTTCTGTAAAAGAGAGTTCAGGTCTGCTCAAGCTCTAGGGGGCCACATGAATGTGCACAGGAGGGACAGAGCTAGGCTCAAACAGTGTCTTAGCCAACATAATGAAGCCCTTCATTGTCATAACAAAAATGATTTTAAAACAAAAAGACTCTCATCTTCTTTGCCCTCAACTATATCCACACGAGAAAATTGTTATCAGCCACCCATATTGTCTTCAATTAGCTGGGGACACCATATGAGATCTCCTGATTCAGAACCAAAAGGGCTAATCAATGCAAAGGAAGAACTTTTAAAAGATTTGGGTTGTAATGATTATGTTGAAACATGTTTGTCTGTGGGACAAAATTCTGTGTTTGGCCAAAAATTGCCAACTGATTCATGTGGGGATGAAGCCATCAGTTATAAAAGACCAAAGACTTCTATTTCTTCACAGCCTGTCTTCCTCAATCCATGTTCAAATGATAGATGCCTAACTTTTCAGTCTGCAGAATTTGTACTTGGACTTAAGCCTGGAATGGAAGAATTGGATCTTGAACTCAGGCTGGGGAAACCACAGAAAGTTTAG 738 0.4092 MEESQYLMWMKRKQILKSHIQAPFGGCNNSSWEEKAFAEDAARILGGCMWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRARLKQCLSQHNEALHCHNKNDFKTKRLSSSLPSTISTRENCYQPPILSSISWGHHMRSPDSEPKGLINAKEELLKDLGCNDYVETCLSVGQNSVFGQKLPTDSCGDEAISYKRPKTSISSQPVFLNPCSNDRCLTFQSAEFVLGLKPGMEELDLELRLGKPQKV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03553 245 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Rops11g03553 245 PANTHER OS07G0101800 PROTEIN 28 243 - -
Rops11g03553 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Rops11g03553 245 Pfam C2H2-type zinc finger 55 79 - -
Rops11g03553 245 SUPERFAMILY beta-beta-alpha zinc fingers 52 82 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03553 Rops-Chr11 67910489 67911316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03553 30 91 C2H2 Transcription Factor Family AT2G37740 74.194 4.00e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops11g03553 zf-C2H2_6 3.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03553 - - aprc:113851273 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03553 11 67910489 67911316 Rops9g00932 9 15134446 15135210 PCT