Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03549 ATGGCGAATCGTTGGTGGGGTGGAAATGTGGGTATAAGAAGAGAGCAAGAATTCATGGATAGCAACAACAACAACAATACAAATGCTACAACCCCAACTAATAGCAGCAACAGCAACACCAACGCAAACACCAACACGACAGAAGACGATGAAAGCCGAGACAACAACGTTGAGGAGCAGAACCCTGGTAGTCATGAAGGTGGTGAACCAGGTAGCAGTGGACGTAGGCCACGTGGCAGGCCAGCAGGTTCGAAGAACAAGCCCAAACCACCCATAGTGATAACAAAGGAAAGCCCCAACTCACTTAGAAGCCACGTGATGGAAATCAGCTCCGGCAGTGACGTGGCGGAGAGTATCGCCGCCTTTGCTAACCGACGCCACCGTGGTGTGTCGGTGCTGAGTGGAAGTGGCATTGTCACAAATGTAACACTTAGACAACCTGCTGCTCCTGGTGGGGTTATCACTCTCCATGGAAGGTTCGAGATACTTTCTCTCTCTGGTGCTTTTTTGCCTTCTCCTTCACCTCCCGGAGCTACCGGCCTTACCGTTTACTTGGCCGGTGGTCAGGGTCAGGTTGTTGGCGGCACAGTCGCGGGGTCATTGGTGGCTTCAGGGCCTGTTATGGTGATTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGTTACCATTAGAAGATGAACAAGGTGAAGAGGAAATGCAAGTTCAGCAGCAACAATCAGGTGTGAATTCAGCAACTGTTGGTTCTTCTTCTCAAGGTTTGGAACAACAACAAGTTTCAATGCCAATGTATAATTTGCCTCCAAATTTGATGCACAATGGTCAGATGCCTCATGATGTGTTTTGGGGACCTCCACCTCGTCCTCCACCACCTTCTTTCTGA 882 0.4943 MANRWWGGNVGIRREQEFMDSNNNNNTNATTPTNSSNSNTNANTNTTEDDESRDNNVEEQNPGSHEGGEPGSSGRRPRGRPAGSKNKPKPPIVITKESPNSLRSHVMEISSGSDVAESIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGVITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGTVAGSLVASGPVMVIAATFANATYERLPLEDEQGEEEMQVQQQQSGVNSATVGSSSQGLEQQQVSMPMYNLPPNLMHNGQMPHDVFWGPPPRPPPPSF* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03549 293 ProSiteProfiles PPC domain profile profile. 99 236 IPR005175 -
Rops11g03549 293 PIRSF ESCAROLA 13 291 IPR014476 GO:0003680
Rops11g03549 293 SUPERFAMILY AF0104/ALDC/Ptd012-like 99 227 - -
Rops11g03549 293 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 37 283 IPR014476 GO:0003680
Rops11g03549 293 MobiDBLite consensus disorder prediction 16 46 - -
Rops11g03549 293 MobiDBLite consensus disorder prediction 1 103 - -
Rops11g03549 293 MobiDBLite consensus disorder prediction 226 258 - -
Rops11g03549 293 Pfam Plants and Prokaryotes Conserved (PCC) domain 103 215 IPR005175 -
Rops11g03549 293 FunFam AT-hook motif nuclear-localized protein 102 230 - -
Rops11g03549 293 MobiDBLite consensus disorder prediction 270 293 - -
Rops11g03549 293 Gene3D - 102 243 - -
Rops11g03549 293 CDD DUF296 103 214 IPR005175 -
Rops11g03549 293 MobiDBLite consensus disorder prediction 233 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03549 Rops-Chr11 67833445 67835546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03549 1 290 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 55.591 2.25e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03549 - - gmx:102667174 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03549 11 67833445 67835546 Rops11g03549 11 67833445 67835546 ECH
Rops11g03549 11 67833445 67835546 Rops9g00937 9 15194128 15196169 PCT