Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03539 ATGATGTCTACAGGGACATCTTCGTATTGGTGTTACAGTTGCAGTCGTTTTGTGAGGGTTTGGAGTCAGGACACGGTGGTTTGTCCCAATTGTGATGGTGGTTTCATAGAGGAGATTGAACATCCTGCACGTTCTATCCATGTTGATGGTCGGAGACGGCGGTTCCCGGCGGCGGCGATGTATATGATAGGCCAACGGCCTGGTGCTGATCAAAATTCTCGTCCTGCTTCTTTCCGGCGAACTCGCCGGAACGGAGGTGACCGGTCACCGTTCAATCCGGTGATTGTCCTCCGCGGTGGTGGATCCGTGGCAGGGGCTGAAAACGGAGGAGAAAGTCGCGGTTTTGAGCTTTTCTATGATGATGGTGCTGGTTCTGGTCTTAGACCTTTACCTCCAAGTATGTCAGAGTTTCTTCTTGGATCTGGGTTTGATAGGTTATTGGAACAACTTTCTCAGATTGAGATCAATGGGATTGGAAGGTATGAACACCCTCCTGCATCAAAAGCTGCCATTGATTCATTACCCACAATTGAAATTGATGATTCTCATTTGGCTATGGAATCTCACTGTGCTGTTTGTAAGGAGCCTTTTGAGTTGGGAACTTCAGTGAGGGAAATGCCTTGTAAACACATATACCATCCTGATTGTATATTACCATGGCTTGCACTTCACAATTCTTGTCCTGTTTGTCGCCATGAGTTACCTTCTGATGCCCCAAATCCACCCCCAACAGGTCAATCTCTTGCTTTGAATGAAGAAGAGAATGTGGGGTTAACAATTTGGAGGTTACCTGGTGGTGGTTTTGCTGTGGGGAGATTCTCTGGTGGAAGAAGAGGTGCTGAGAGGGAACTTCCTGTTGTTTACACTGAAATGGATGGTGGTTTCAACAATGGTGGTGAACCAAGGAGGATTTCTTGGTCTTCTAGAGGTAATAGAGGGAGGGAGAGAGGTGGTTTTTACAGGATGTTTCGCAATTTGTTTGGTTGCTTCAGAGGTGGTAGTGGAGTTGGAACTCAACGTTCTAGTTCTACTAGAGAGTCTAGATCTTTAAGGGCAAGTTCATCTCATTCTAGCATGGATCCTTCTCCTCGTTCCCGCAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGAGCATGGTAA 1143 0.4672 MMSTGTSSYWCYSCSRFVRVWSQDTVVCPNCDGGFIEEIEHPARSIHVDGRRRRFPAAAMYMIGQRPGADQNSRPASFRRTRRNGGDRSPFNPVIVLRGGGSVAGAENGGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDDSHLAMESHCAVCKEPFELGTSVREMPCKHIYHPDCILPWLALHNSCPVCRHELPSDAPNPPPTGQSLALNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGEPRRISWSSRGNRGRERGGFYRMFRNLFGCFRGGSGVGTQRSSSTRESRSLRASSSHSSMDPSPRSRRTWSMDVNSGMRAW* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03539 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 70 235 - -
Rops11g03539 380 Pfam Protein of unknown function (DUF1117) 256 358 IPR010543 -
Rops11g03539 380 CDD RING-H2_RNF126-like 190 231 - -
Rops11g03539 380 SUPERFAMILY RING/U-box 170 243 - -
Rops11g03539 380 Pfam Ring finger domain 189 231 IPR001841 -
Rops11g03539 380 SMART ring_2 190 230 IPR001841 -
Rops11g03539 380 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Rops11g03539 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 237 IPR013083 -
Rops11g03539 380 MobiDBLite consensus disorder prediction 335 372 - -
Rops11g03539 380 MobiDBLite consensus disorder prediction 334 380 - -
Rops11g03539 380 FunFam E3 ubiquitin-protein ligase RING1-like 152 237 - -
Rops11g03539 380 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Rops11g03539 380 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03539 Rops-Chr11 67665023 67666919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03539 129 237 C3H Transcription Factor Family AT5G01980 42.202 6.45e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03539 K11982 - gmx:100807324 612.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03539 11 67665023 67666919 Rops11g03539 11 67665023 67666919 ECH