Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03535 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATAGAAAATGGGTTTCCGGGATTTATGCCAGAGAGGCGTGCATTGCGTGTTCATGCAGCACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGTTCTCCTGTTATTCATGATACTGAACTCTCACCAGATGTCACCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCAGCAGCCAGTGGCCTTCTTGGCCACACAGAACTGCGGTTGCATATGCCACCATCAATAGCACTCGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAGCTTGCACTCCTTGATCGGGAGTTTGATGATCTAGACTATGAAACTTTAAGAGCTCTGGATTCAGATAATATTTCTACTGCACCTTCTATGACTGAGGAAGAGATAAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCCCAGAGTAGTTCCTCCATGCAACAAGCATCGCCTTCCACTTCTGCTGAGCAGAAGATGCAGGATAATTCGAATGCAGCTGGGAGCATGAAAGCCTCTGATGATGAGCTCACTTGTAGTGTATGCTTGGAGCAAGTTAATGTTGGAGACATACTTCGTAGCTTGCCCTGTTTGCATCAGTTTCACGCTAACTGCATCGATCCCTGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTTCGAGCTGGATCTGGGTGGAATGACAGTGGACATAATGATATAGCGGACATGGTTTGA 822 0.4672 MSFVFRGTRADIENGFPGFMPERRALRVHAARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNISTAPSMTEEEINALPVHKYKVSGPQSSSSMQQASPSTSAEQKMQDNSNAAGSMKASDDELTCSVCLEQVNVGDILRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNDSGHNDIADMV* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03535 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Rops11g03535 273 SUPERFAMILY RING/U-box 208 257 - -
Rops11g03535 273 MobiDBLite consensus disorder prediction 172 204 - -
Rops11g03535 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 258 IPR013083 -
Rops11g03535 273 CDD RING-H2_PA-TM-RING 212 254 - -
Rops11g03535 273 SMART ring_2 213 253 IPR001841 -
Rops11g03535 273 PANTHER TARGET OF ERK KINASE MPK-1 1 259 - -
Rops11g03535 273 Pfam Ring finger domain 212 254 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03535 Rops-Chr11 67635426 67639949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03535 1 273 C3H Transcription Factor Family AT3G55530 78.339 1.12e-145 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03535 K16283 - gmx:100777936 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03535 11 67635426 67639949 Rops11g03535 11 67635426 67639949 ECH