Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03526 ATGGGGTGCTGCTTTAGTGCAAGGGTCAAAGCTGAGAGCCCTCCACGCAATGGTTTGAATTCAAAGGATAGTAGTAGAGAAGGGAATGGTTTAAGCAGCAGGGTCTCCTCTTCATCTGTGCTTCTAACTTATCGGACAGAGGGTGAGATATTGCAGTCCATCAATTTGAAGAGCTTCACATTCAATGAGCTCAGAAATGCTACAAGGAACTTTCGTCCCGATAGTATGGTGGGTGAAGGTGGGTTTGGTTGTGTATTCAAGGGGTGGATTGATGAGCACACACTTGCCCCTACTAAACCAGGTACTGGATTTGTCATTGCTGTGAAGAGGCTTAAACAAGATGGCTCTCAAGGACACAGCGAATGGTTGACAGAAATTAACTACCTGGGGCAGTTGCATCATCCTAATCTTGTGAAACTTATTGGTTACTGCTTAGAGGATGACCACCGGATTTTGGTATATGAATTTTTGGCCAAGGGCAGTTTGGATAATCATTTGTTTAGAAGATCTTCTTACTTTCAGCCACTCTCTTGGAACATCCGTATGAAGGTCGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTAGAAGTAATATATCGAGATTTCAAAACTTCCAATATCTTGCTTGATTCTAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCTAAAGATGGACCAGAAGGTGATAAGAGCCATGTCTCCACAAGGGTAATGGGCACCTTAGGCTATGCAGCTCCTGAGTATTTAGCCACAGGTCACCTAACCAAAAAGAGTGATGTATACAGTTTTGGGGTTGTTCTACTGGAAATTATGTCAGGCAAACGCGCATTGGACAAAAACAGGCCATCCGGGGAGCACAATTTAGTTGAATGGGCAAAACCATTGCTCATCAGCAAACGCAAGATATCCAAAGTTATGGATGCACGTATAGAAGGCCAATTCTCGTTGCGTGAAGCAATGAAAGTGGCTCATCTTGCAATTCAATGTCTGTCTACAGAACCCAAATTTAGACCAAACATAGATGAGGTGGTGAGATCATTGGAGCAACTTCAGGATTCCAAAGACACAAGTGGTGGAGTAGGAAGCTCTGTGTCTCAAAATCAAACCATCAAAGGGAATGATCATAGCTCAGGTAGCAGTGGTTCAAAACATGGAACAAGTGTCAATGAATCTTTAAGTGGAGAAGGTACTCCTAATCGTAGTTCCTCTGCTTCTCCTCTTCATAAGTAG 1248 0.4303 MGCCFSARVKAESPPRNGLNSKDSSREGNGLSSRVSSSSVLLTYRTEGEILQSINLKSFTFNELRNATRNFRPDSMVGEGGFGCVFKGWIDEHTLAPTKPGTGFVIAVKRLKQDGSQGHSEWLTEINYLGQLHHPNLVKLIGYCLEDDHRILVYEFLAKGSLDNHLFRRSSYFQPLSWNIRMKVALDAAKGLAFLHSDEVEVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPEGDKSHVSTRVMGTLGYAAPEYLATGHLTKKSDVYSFGVVLLEIMSGKRALDKNRPSGEHNLVEWAKPLLISKRKISKVMDARIEGQFSLREAMKVAHLAIQCLSTEPKFRPNIDEVVRSLEQLQDSKDTSGGVGSSVSQNQTIKGNDHSSGSSGSKHGTSVNESLSGEGTPNRSSSASPLHK* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03526 415 FunFam Serine/threonine-protein kinase BIK1 38 156 - -
Rops11g03526 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Rops11g03526 415 Gene3D Transferase(Phosphotransferase) domain 1 157 376 - -
Rops11g03526 415 MobiDBLite consensus disorder prediction 10 33 - -
Rops11g03526 415 ProSitePatterns Protein kinases ATP-binding region signature. 77 109 IPR017441 GO:0005524
Rops11g03526 415 CDD STKc_IRAK 77 356 - -
Rops11g03526 415 PANTHER OS01G0588500 PROTEIN-RELATED 33 357 - -
Rops11g03526 415 MobiDBLite consensus disorder prediction 17 33 - -
Rops11g03526 415 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03526 415 FunFam Probable serine/threonine-protein kinase PBL8 157 373 - -
Rops11g03526 415 Pfam Protein tyrosine and serine/threonine kinase 75 353 IPR001245 GO:0004672|GO:0006468
Rops11g03526 415 SUPERFAMILY Protein kinase-like (PK-like) 44 353 IPR011009 -
Rops11g03526 415 MobiDBLite consensus disorder prediction 357 415 - -
Rops11g03526 415 Gene3D Phosphorylase Kinase; domain 1 46 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03526 Rops-Chr11 67429672 67433257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03526 49 366 Glycoside Hydrolase AT3G07070 47.649 2.86e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops11g03526 PK_Tyr_Ser-Thr 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03526 - - gmx:100775335 625.55