Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03523 ATGAGAAAACCTTGTTGTGACAAAGAAGGCACTAACAAAGGTGCTTGGTCCAAGCATGAAGATCAAAAGCTTATTGATTACATCAGGGCTCATGGTGAAGGTTGTTGGCGTTCACTTCCCAAAGCTGCAGGGCTGCATCGTTGTGGTAAAAGTTGTAGGTTGAGATGGATAAATTATTTACGACCAGACATTAAACGTGGTAACTTTGCCCAAGATGAAGAAGACCTCATCATTAAACTTCATGCCCTTCTTGGCAACCGGTGGTCACTCATAGCTGGAAGGTTGCCAGGACGTACAGACAACGAGGTCAAGAACTATTGGAATTCTCACATCCGAAGAAAGTTAATGAAGATGGGAATTGATCCAAATAACCATAAGCTACATCAAAGCTTCCCTGTTCCACATGCTCACCATGTTTCTGATCCCACCACACCATCATCTGGGTCCATGAACAAAGAGCATAGAGACCCTTTCATCAAATCCTATGGTTCCGGGAATGATAGGATTTCAGACACACGTAGTTGTGTTGTTGAGGAAACACCAATGGTTCCTTCATCATCATCACACTTGAATCTTGACCTGAGTATTGCTTTCCCTTCACCTAGACTCGCTGTTGGGGAAGATAAATCTAAACATGATTCTGAGTTCACTAAGACAAGGAACATAGATGAGGATTCCACTCCTATCCTTCTTCTGTTTCGATAA 705 0.427 MRKPCCDKEGTNKGAWSKHEDQKLIDYIRAHGEGCWRSLPKAAGLHRCGKSCRLRWINYLRPDIKRGNFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLMKMGIDPNNHKLHQSFPVPHAHHVSDPTTPSSGSMNKEHRDPFIKSYGSGNDRISDTRSCVVEETPMVPSSSSHLNLDLSIAFPSPRLAVGEDKSKHDSEFTKTRNIDEDSTPILLLFR* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03523 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Rops11g03523 234 FunFam Transcription repressor MYB4 68 134 - -
Rops11g03523 234 Gene3D - 13 65 - -
Rops11g03523 234 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops11g03523 234 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Rops11g03523 234 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Rops11g03523 234 CDD SANT 68 111 IPR001005 -
Rops11g03523 234 CDD SANT 15 60 IPR001005 -
Rops11g03523 234 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Rops11g03523 234 FunFam MYB-related transcription factor 12 65 - -
Rops11g03523 234 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Rops11g03523 234 MobiDBLite consensus disorder prediction 134 166 - -
Rops11g03523 234 SMART sant 12 62 IPR001005 -
Rops11g03523 234 SMART sant 65 113 IPR001005 -
Rops11g03523 234 Gene3D - 68 132 - -
Rops11g03523 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Rops11g03523 234 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03523 Rops-Chr11 67387977 67389779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03523 2 199 MYB Transcription Factor Family AT4G34990 55.665 2.69e-75 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g03523 Myb_DNA-binding 2.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03523 K09422 - gmx:100793444 310.457