Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03518 ATGGAGAGTCCTCATTCTTCTCCATCTTCTTCCTTTTCTTCTTCTTCGTCTTTGTCGTCGAGTTGTTCTTGGGAGGGACACGTCACCGACGCCGTCAATTTGGAATCGGACGAGCCGCGAACGCCGTTGGCCGTCCGGCGAGCACTTCAGCTCTTGAATTCCGGAGAGCCGGAGCTCCGGCTTCAAGCCGCTCGTGACATCCGGCGACTCACCAAAACCTCGCAGCGCTGTCGGCGACAGCTCTCAGAAGCCGTGGGCCCACTCGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCGCTCTACTCGCTCTGCTCAACCTAGCCGTCAAAGATGAAAAGAATAAAATCAATATCGTGGAGGCTGGAGCATTGGGACCGATAATTAGTTTCCTCAAGTCACAAAATCCAAATCTCCAGGAGTCTGCAACTGCATCTTTGCTCACACTATCTGCCTCTGCGACCAACAAACCAATTATTAGTGCTTGTGGTGCCATTCCTCTTCTTGTGGAGATCCTTAGAGATGGAAGCCCACAAGCTAAAGCTGATGCAGTAATGGCTCTCTCTAACTTATCAACACACGCCCATAATCTCACCATCATTCTCGAAACAAATCCAATCCCTTTTATAGTTGATCTTCTTAAAACCTGTAAAAAGTCCTCAAAAACAGCTGAAAAATGCTGTGCTTTGATAGAATCCTTGGTGGATTATGATGAGGGAAGAACCGCCTTGACATCTGAAGAAGGTGGGGTTCTGGCAGTTGTGGAAGTTCTTGAAAATGGCACTCTCCAAAGTAGGGAGCATGCAGTTGGAGCACTATTGACAATGTGCCAAAGTGATAGATGTAAATACAGGGAACCAATTCTGAGAGAAGGTGTCATTCCAGGACTTCTTGAGCTTACTGTTCAAGGAACTCCCAAGTCTCAGATAAAAGCACGCACCCTTTTGCAGTTACTAAGGGAGTCTCCTTATCCAAGATCTGAAATTCAACCTGACACTCTTGAGAATATAGTATGCAACATCATATCACAGATTGATGGCGATGATCAATCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAACAAAGTCTCAGGCATTTACAGCAAAGGGCTCTAGTATGCACCCCAAGTGATTTGCCTATAGCTGGATGTGCTTCTGAAGTTTCTTTAAAATGA 1200 0.47 MESPHSSPSSSFSSSSSLSSSCSWEGHVTDAVNLESDEPRTPLAVRRALQLLNSGEPELRLQAARDIRRLTKTSQRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALGPIISFLKSQNPNLQESATASLLTLSASATNKPIISACGAIPLLVEILRDGSPQAKADAVMALSNLSTHAHNLTIILETNPIPFIVDLLKTCKKSSKTAEKCCALIESLVDYDEGRTALTSEEGGVLAVVEVLENGTLQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQIKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQSGKAKKMLAEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVSLK* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03518 399 PANTHER U BOX DOMAIN-CONTAINING 33 327 - -
Rops11g03518 399 SMART arm_5 73 112 IPR000225 GO:0005515
Rops11g03518 399 SMART arm_5 196 238 IPR000225 GO:0005515
Rops11g03518 399 SMART arm_5 114 154 IPR000225 GO:0005515
Rops11g03518 399 SMART arm_5 155 195 IPR000225 GO:0005515
Rops11g03518 399 SMART arm_5 240 280 IPR000225 GO:0005515
Rops11g03518 399 Pfam Armadillo/beta-catenin-like repeat 115 152 IPR000225 GO:0005515
Rops11g03518 399 FunFam U-box domain-containing protein 4 28 381 - -
Rops11g03518 399 MobiDBLite consensus disorder prediction 1 23 - -
Rops11g03518 399 Gene3D - 20 382 IPR011989 -
Rops11g03518 399 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 166 208 IPR000225 GO:0005515
Rops11g03518 399 SUPERFAMILY ARM repeat 46 346 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03518 Rops-Chr11 67235788 67239112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03518 32 322 U-box Gene Family AT2G23140 33.221 1.88e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03518 - - gmx:100780954 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03518 11 67235788 67239112 Rops11g03518 11 67235788 67239112 ECH
Rops11g03518 11 67235788 67239112 Rops9g00970 9 15860392 15865554 PCT