Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03517 ATGGCACTGGCCAAAGACCAAATTCCACATGATTCAAGCATTGGAAGCAAGGTTCAAACTTGTGTTTTCAATGAGACTGCTGTGAAGATTAACTCCTTGACCACTAATGGGGTCAATGAGTACCACAAATCTGTGCTTGAAGAGGAAGATGGCTCACAGAGTACTAATGGACTCAGCAATGATTCAGCTATAACCCATTCTCCTCCTCTATGTGGTAGTAGCAATGGATATGTTCACAAGGGAACAAACCTTCAGCTTGAAGAAGCAAAATCTCTGATCAATTTCAAGAACAGTGGATACAGCAATCCCATGCAAGCTAGTGAATCTTTGCTTAGCTTTCAGCCTCATAACTGTTACTTGAAAGACAGCAATCAGAGAGAGTACAGTGTTTGGGAGAATAATTTACATCAAGGCTATAACCAATGGAATCAGATTAGTCCCAGAAGCACCAAAAACTTACACCTGCTGCAGGATTCCAATTGCTTTCAAACTGCTAGTGGTTATAGCACCATGGTCAATAGTGCAAAAGAGAAACAACATGGCCAAAGTTCACATGGGTGGCTCTATTCTGGACAAACTATCCCTGCTGATAGCCAACAGAAGTTAGGAACACAAGAATCAGTCTTGAAGAAGCGCCCTTATATGGGAGAGAATATGAAAGCTGCCAAGATGCAATGCTCAACTGAGAGTAAAGCGCCAAAACATAAGTCAAGTCCATCCAAAGATCCTCAAAGTGTTGCTGCCAAGGTTTGCTTCAATCTTAAGTCAATTTATGTTAGATATGTACAAAGTGTTGATTGCAAACTAAGCAAGAATAAAAGGAGATTCAATGTTGATAGAATGTTTGTCTCACAGAATAGGAGAGAGAGGATAAGTGAGCGGTTGAAGATACTACAAGAACTGGTGCCTAATGGCTCTAAGGTTGATTTGGTTACCATGCTGGAGAAAGCAATCAGTTATGTAAAGTTTCTTCAATTGCAAGTGAAGGTATTGGCAACTGATGAATTTTGGCCTGTCCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAAGAAGTCATCGATGTCATTCTTTCATCTCAAAGAGACACTAGTTCAAGCTCACAGTAG 1110 0.4045 MALAKDQIPHDSSIGSKVQTCVFNETAVKINSLTTNGVNEYHKSVLEEEDGSQSTNGLSNDSAITHSPPLCGSSNGYVHKGTNLQLEEAKSLINFKNSGYSNPMQASESLLSFQPHNCYLKDSNQREYSVWENNLHQGYNQWNQISPRSTKNLHLLQDSNCFQTASGYSTMVNSAKEKQHGQSSHGWLYSGQTIPADSQQKLGTQESVLKKRPYMGENMKAAKMQCSTESKAPKHKSSPSKDPQSVAAKVCFNLKSIYVRYVQSVDCKLSKNKRRFNVDRMFVSQNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKPPDISQVKEVIDVILSSQRDTSSSSQ* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03517 369 MobiDBLite consensus disorder prediction 224 243 - -
Rops11g03517 369 Gene3D - 270 336 IPR036638 GO:0046983
Rops11g03517 369 CDD bHLH_AtIND_like 240 338 - -
Rops11g03517 369 FunFam Transcription factor bHLH83 279 332 - -
Rops11g03517 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 334 IPR036638 GO:0046983
Rops11g03517 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Rops11g03517 369 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 286 333 IPR045843 GO:0003700|GO:0006355
Rops11g03517 369 SMART finulus 286 330 IPR011598 GO:0046983
Rops11g03517 369 Pfam Helix-loop-helix DNA-binding domain 285 325 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03517 Rops-Chr11 67190716 67192249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03517 76 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 41.118 3.20e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops11g03517 HLH 5.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03517 - - gmx:100810010 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03517 11 67190716 67192249 Rops11g03517 11 67190716 67192249 ECH
Rops11g03517 11 67190716 67192249 Rops9g00971 9 15921995 15923429 PCT