Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03508 ATGGAGAACTTGTTGGGTCTGCTGAGAATTCATGTTGCAAGAGGGGTCAATCTTGCTATCAGGGATGTAGTGAGCAGTGACCCTTATGTTGTCATCAAAATGGGCAAGCAGAAGCTGAAGACCCGAGTAGTGAGGAAGAATCTAAATCCTGAATGGAATGATGACTTGACTTTATCCATTTCAGATCCTCATGCTACAGTCCAACTATTTGTGTATGACAAGGACACATTTAGCTTGGATGACAAAATGGGGGATGCTGAGTTTGCCATTGGTCCATTCATTGAAGCAGTGAAGATGCGTTTGGAAGGTCTCCCTAATGATACTATAGTTACAAAAGTGCCACCTAGCCGACAAAATTGCCTAGCAGAAGAGAGTCACATTGTTTGGAAGGATGGCAAAGTTATCCAAAACATGTTTCTTAGGCTGAGAAATGTTGAGAGTGGGGAAGTGGAGCTTCAGTTGCAATGGATTGACATTCCTGGTTCAAGGGGTTTGTAG 498 0.4317 MENLLGLLRIHVARGVNLAIRDVVSSDPYVVIKMGKQKLKTRVVRKNLNPEWNDDLTLSISDPHATVQLFVYDKDTFSLDDKMGDAEFAIGPFIEAVKMRLEGLPNDTIVTKVPPSRQNCLAEESHIVWKDGKVIQNMFLRLRNVESGEVELQLQWIDIPGSRGL* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03508 165 CDD C2_ArfGAP 5 148 - -
Rops11g03508 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Rops11g03508 165 Gene3D C2 domain 4 160 IPR035892 -
Rops11g03508 165 SMART C2_3c 7 102 IPR000008 -
Rops11g03508 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Rops11g03508 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Rops11g03508 165 Pfam C2 domain 6 92 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03508 Rops-Chr11 67105066 67106968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03508 38 165 C2H2 Transcription Factor Family AT1G70790 56.923 8.33e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03508 - - gmx:100793531 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03508 11 67105066 67106968 Rops5g00360 5 6305617 6307805 ECH
Rops11g03508 11 67105066 67106968 Rops11g03508 11 67105066 67106968 ECH