Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03496 ATGGCTTCTTTCTTGGATATGTCACTTGATGATAGAATTAAGAACAGGAGTAACAGAGGGAGAGGTAGAGGGCGTGGCAGAGCCCGTTCTGGCCGTGGACCAAGCGGGACTCTTAGTGGTGGAAGAATGACTGGTGCTGTTAATAATAGAAGACTGTCTGGTCCTGGTAATGGTGGAAGAACAACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAATGCTCGGCCATCGTCTTATACTATTGCCAAGTCCATTCGCAGAACCAGGCCTTTTCCATGGCAGCCTGATTTGTTTGAAGATAGCCTGAGAGCTGCAGGGATTCAAGGAATAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGATTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAACAATGTGCTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCCAATGCAGAATTGCCTATATCTGCTCGTGTGAATGTCACTGGGGTGAATGGACAGCGGAAGAGGACAGTTGTAATGACGCCTAGAGGTGGTCGAGCTGGAGGTTCTGCCATGCCTAATCGTGGTGCTGGTTGGGGGCGTCGTGGTGGCCCAAGAAGTGGGAGTAGGCGTGGTCGAGGCCGTGGTGGTGGTGGTGGTGGTCGTGGTCGTGGCAGGGGTGGAGGCCGAGGTCGTGGAAGAAAGGATGCAGTTGATAAGTCAGCTGAGGATCTTGACAAGGAGCTGGAGACATATCATGCTGAGGCCATGAACATCTCATGA 891 0.4882 MASFLDMSLDDRIKNRSNRGRGRGRGRARSGRGPSGTLSGGRMTGAVNNRRLSGPGNGGRTTGAVRRGPLMVNARPSSYTIAKSIRRTRPFPWQPDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFSELGDLKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPISARVNVTGVNGQRKRTVVMTPRGGRAGGSAMPNRGAGWGRRGGPRSGSRRGRGRGGGGGGRGRGRGGGRGRGRKDAVDKSAEDLDKELETYHAEAMNIS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03496 296 SUPERFAMILY RNA-binding domain, RBD 18 188 IPR035979 GO:0003676
Rops11g03496 296 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 293 - -
Rops11g03496 296 SMART FoP_duplication_2 219 296 IPR025715 -
Rops11g03496 296 Gene3D - 110 190 IPR012677 -
Rops11g03496 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Rops11g03496 296 CDD RRM_THOC4 114 188 - -
Rops11g03496 296 MobiDBLite consensus disorder prediction 41 56 - -
Rops11g03496 296 Pfam C-terminal duplication domain of Friend of PRMT1 237 290 IPR025715 -
Rops11g03496 296 SMART rrm1_1 115 187 IPR000504 GO:0003723
Rops11g03496 296 MobiDBLite consensus disorder prediction 216 296 - -
Rops11g03496 296 MobiDBLite consensus disorder prediction 1 65 - -
Rops11g03496 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Rops11g03496 296 MobiDBLite consensus disorder prediction 266 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03496 Rops-Chr11 66920102 66925685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03496 113 188 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 2.36e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03496 K12881 - gmx:100801491 435.261