Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03493 ATGGGAAGGCAACCTTGTTGTGACAAAGTTGGGTTGAAGAAAGGGCCATGGACTGCTGAGGAAGACAAGAAACTCATCAACTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTTCCTAAGTTAGCAGGGTTGTTAAGGTGTGGGAAAAGTTGCAGGCTCAGATGGACAAATTACCTGAGACCTGACTTAAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGCAACAGATGGTCTAAGATTGCTTCTCATCTCCCAGGAAGAACTGATAATGAGATCAAGAACCACTGGAATACCCACATAAAGAAAAAGCTAAAGAAAATGGGAATTGATCCTGTTACCCACAAGCCACTCTCTAATGCAACTGAGCAAACTAAGACACAATCTGAACAACAACAACAACAGCAGCAGCAACCATTACAAGAACAACAACAACCTTCCCCAGTTGAATTAGACCCCAAATTTGAATCTGAAAATGAACAAAATAAGGAGCCAGAGAAGTCAGAGACTTCATTGGAATCATCATCAACCATCACTGAAGCTAAAGAGGAAGACCAAATTATGACACCCCTATTTGACTCAATGGAACTAATGAATGAGTTCAACACAGATGAAGTTCCAATAATAAAACCAGATGAGATTCTAGTTCCCTGTGCTCCTTCCACTTCATCAACAAGTGCATCATCATCATCCTCTTCTGCTTCAAATTCATCCAACTTCCTTGATGACTTTGTGCTCCCAGATTTTGAGTGGTCCCATAATTATGATGATAATAATATTGAAAATATCAATGACAACAGCAATAGCAGTATGGCCTTGTGGGATGATGACTTTATTAGAAGTTGGGATTTTCTTATTAATGATGATGATGGTGACAGAAAGCAAGTGTTTGATGCTTCTCTTAATCAGCACCCAAGAATGATCATGGACACAGAATCTTGGGCCTATGGGTTGTTTTGA 993 0.4018 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSNATEQTKTQSEQQQQQQQQPLQEQQQPSPVELDPKFESENEQNKEPEKSETSLESSSTITEAKEEDQIMTPLFDSMELMNEFNTDEVPIIKPDEILVPCAPSTSSTSASSSSSSASNSSNFLDDFVLPDFEWSHNYDDNNIENINDNSNSSMALWDDDFIRSWDFLINDDDGDRKQVFDASLNQHPRMIMDTESWAYGLF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03493 330 SMART sant 66 114 IPR001005 -
Rops11g03493 330 SMART sant 13 63 IPR001005 -
Rops11g03493 330 CDD SANT 16 61 IPR001005 -
Rops11g03493 330 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops11g03493 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops11g03493 330 MobiDBLite consensus disorder prediction 128 161 - -
Rops11g03493 330 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops11g03493 330 FunFam MYB transcription factor 11 67 - -
Rops11g03493 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops11g03493 330 FunFam MYB-related transcription factor 70 130 - -
Rops11g03493 330 PANTHER F14D16.11-RELATED 1 271 - -
Rops11g03493 330 Gene3D - 70 157 - -
Rops11g03493 330 MobiDBLite consensus disorder prediction 164 181 - -
Rops11g03493 330 CDD SANT 74 112 IPR001005 -
Rops11g03493 330 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops11g03493 330 MobiDBLite consensus disorder prediction 119 197 - -
Rops11g03493 330 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Rops11g03493 330 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops11g03493 330 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03493 Rops-Chr11 66877439 66879734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03493 1 308 MYB Transcription Factor Family AT1G66230 54.662 1.27e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g03493 Myb_DNA-binding 9.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03493 K09422 - gmx:100803624 489.574