Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03470 ATGACTAGAAAGAAGGTAAAACTAGCATTCATAGTCAATGACTCTGCTAGGAAGGCCACATTCAAGAAAAGGAAGAAGGGTCTAATGAAAAAGGTTGGTGAACTTAGCACCCTTTGTGGGATTGATGCCTGTGCTATAGTTTACAGTCCCTATGATCCTCAACCAGAGGTTTGGCCATCCGCATTGGGAGTCCAAAGGGTGCTCGCCAAGTTCAGGAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAAAGTTTTCTGAGACAAAGGATCCAAAAGGTCAAAGAACAGGTGAAGAAACAAAGGAAGGATAATAGAGAAAAGGAGATAACACAGCTCATGTTTCAGTACCTTGGTGCAGGTAAAATTATGCATAACATGAGCATGGTTGATATGAATGATCTTGCATGGTTGATTGACCAGAACTTGAAAGACATCAATAGAAGGGTTGAAACATTGACTAAGAATGCTCAGAGCCAACCCCAAATGGTAGCACCACCAATGGTGACTGATGAATTAGCCAAGATTGAAGAAAAGGCACAAGGGAGTCATGTTCATGGCCAGGGATTTGATATGAACATGGATGTCATGCAAAAGCAGAATTGGTTTATGAATTTGATGAATAGTGGTGGTGGGGGTGAGACACTGCCTTTGGGAGATCTCAATCACCAAAATGGCTTTTGGCCAAACCCATTTTTCCACTGA 714 0.423 MTRKKVKLAFIVNDSARKATFKKRKKGLMKKVGELSTLCGIDACAIVYSPYDPQPEVWPSALGVQRVLAKFRRMPELEQSKKMVNQESFLRQRIQKVKEQVKKQRKDNREKEITQLMFQYLGAGKIMHNMSMVDMNDLAWLIDQNLKDINRRVETLTKNAQSQPQMVAPPMVTDELAKIEEKAQGSHVHGQGFDMNMDVMQKQNWFMNLMNSGGGGETLPLGDLNHQNGFWPNPFFH* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03470 237 PANTHER MADS BOX PROTEIN 3 153 - -
Rops11g03470 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Rops11g03470 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops11g03470 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops11g03470 237 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Rops11g03470 237 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g03470 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops11g03470 237 Coils Coil 87 114 - -
Rops11g03470 237 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Rops11g03470 237 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Rops11g03470 237 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03470 Rops-Chr11 66557258 66557971 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03470 1 156 Type I MADS-box Gene Family AT5G48670 66.026 4.78e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g03470 SRF-TF 8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03470 - - gmx:100813231 395.586