Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03469 ATGGTGCTGTCTTGGGCTAGAAGAAATGTTTTCCGCCGTGTCCGCAAGGGGAAGGAACAAGTTCATGTTGGTGATTTGGAGGTGGAGATTGTGATCCCCACTCATTTCAAGTGCCCTGTGAGTTTGGACTTGATGAAAGATCCAGTGACTCTATCAACTGGTATCACCTATGATAGAGGAAGCATTGAGAAGTGGATTGAAGAAGGGAACAAAACTTGCCCTCTTACCAATCAAGTCCTCACAAGCTTTGACATGATCCCAAACCATGCCATTAGAAGTATGATTCAAGATTGGTGTGTGGAAAATAGTTCTTATGGGATTGAAAGGATCCCAACTCCTCGGATACCCGTGTCCAAGTACGAGGTTTCTGAGGTTTGTTCGAGGTTGTTGTCTGCTGCTCAAAGAGGGGATGATCACAAGTGTCAAGAATTGGTGGCAAAGATTAAGGTCAGGGGGAGAGAGAGTGAGAGGAACAAGAGGTGTATAATAGGGAATGGTGCTGGTGTTGTCCTAGCTAATGCCTTTGATTCTTTTTCAAGTGCTTCTATTGAGAAGCATGTGGTTATTTTGGAGGAGATATTGGAGGTTTTGACATGGATGATCCCACTTTGTGAAGAGGGTCAATCCAAATTAAGTTCAGCAGCTTCTTTAAGTTGCATGGTTTGGTTTCTAGATAGTAAGGATCTTGGGGCAAGGCAAAATGCTATTTTGTTGCTTAAGGAAGTGTGTGTTGAGGAACTAGCCAAAACTGAAGGAATTGTTGAAGGTTTGATTAAGATTGTTAGGGAGTCTAATGGGACTACTTCTACCAAGGCATGTTTGGTCACAATTTTCAAATTGGTTTCTTTAGCTGAGAATAGAGAGGCAATTGCAAAAAGATTTGTGGAATTGGGTTTGGTTCCATTGCTGCTAGAAGCAATTGTTGATGCAGAAAAAGGGATATGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGACTTCAAAGAAGGGAAGGAGATTGCCAAAATGAATGCTCTAACCTTGCCTCTTGTGGTAAAGAAGATTTTGAGAGTGTCCCACTTGGCTTCTACTTTTGCAGTCTCTATTCTTAGCAAGATATGTGACAAGAAGGAAGAAAGGATTTTGATTGAGGCACTTCAAGTTGGGGTTTTTCAGAAACTATTGCTAATGTTGCAAATTGGTTGTGATGAAAACACAAAGGAGAAGGCTACTGGGTTGTTGAAACTGTTGAATGGTTGCAGAAGCAAAGCAGAGTGCATTGACTCTTCATTGGATTTCAAGCATCTTAAGAAGCCCTTCTAA 1305 0.4176 MVLSWARRNVFRRVRKGKEQVHVGDLEVEIVIPTHFKCPVSLDLMKDPVTLSTGITYDRGSIEKWIEEGNKTCPLTNQVLTSFDMIPNHAIRSMIQDWCVENSSYGIERIPTPRIPVSKYEVSEVCSRLLSAAQRGDDHKCQELVAKIKVRGRESERNKRCIIGNGAGVVLANAFDSFSSASIEKHVVILEEILEVLTWMIPLCEEGQSKLSSAASLSCMVWFLDSKDLGARQNAILLLKEVCVEELAKTEGIVEGLIKIVRESNGTTSTKACLVTIFKLVSLAENREAIAKRFVELGLVPLLLEAIVDAEKGICEKALGVLDCICDFKEGKEIAKMNALTLPLVVKKILRVSHLASTFAVSILSKICDKKEERILIEALQVGVFQKLLLMLQIGCDENTKEKATGLLKLLNGCRSKAECIDSSLDFKHLKKPF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03469 434 SUPERFAMILY ARM repeat 154 410 IPR016024 -
Rops11g03469 434 Gene3D - 119 282 IPR011989 -
Rops11g03469 434 SUPERFAMILY RING/U-box 30 108 - -
Rops11g03469 434 CDD RING-Ubox_PUB 33 85 IPR045210 -
Rops11g03469 434 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Rops11g03469 434 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Rops11g03469 434 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Rops11g03469 434 Gene3D - 283 426 IPR011989 -
Rops11g03469 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Rops11g03469 434 PANTHER WDSAM1 PROTEIN 29 422 IPR045185 GO:0061630
Rops11g03469 434 FunFam RING-type E3 ubiquitin transferase 32 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03469 Rops-Chr11 66555066 66556624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03469 27 434 U-box Gene Family AT5G37490 49.398 7.62e-133 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03469 - - gmx:548086 665.611