Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03467 ATGAGAAATAAGATGACCCACACGGCCAAGTTCAAAACTTTCCCCATTTTACTAACTGGGTTCCTCTCACTTTTCCTCTATGTCCACTCCCAACCTACTTCCCAAGATGCCCCTGCAATGCTTGCTCTTAGAAACTCCCTCAACCCACCCAAATCACTCGGTTGGTCCGACCCGGATCCATGCAAATGGAACCATGTAGTGTGCTCCGAAGAACGGGTCACCCGGATCCAAATCGGTCACCAAGGCCTCCAAGGTACCCTCCCAAATGGCACCACCCTCCAAAGCTTAACCGAATTAGAACGCTTGGAGCTCCAATTCAACAACATTTCGGGTCCTCTTCCAAGCTTAAACGGGTTAAGTTCCCTCCAAGTTCTAATCTTAAGCAACAACCACTTCACTTCAATCCCCCACGATTTTTTCTCCGGCATGTCACAGCTTCAATCTGTTGAAATAGACAACAACCCTTTTGAAAGTTGGGAAATCCCTGACAGCATAAAAAATGCTTCTTCACTTCAGAACTTTTCTGCTAATTCAGCCAACATCATGGGAAAAATTCCAGATTTTTGGTCCCTTCTACCTGGATTGACCCACTTGCATTTAGCCTTCAATAACCTTGAAGGTGTGTTGCCTTTGAGTTTTTCTTCATTGCAGGTTCAGACTCTTTGGTTGAATGGTCAAAAGGGTGGTGGTCTTGGTGGCACGGTTGAGATTTTGCAAAACATGACTTCATTGACACAGCTTTGGTTGCATTCAAATGCTTTTACTGGGCCTTTACCTGATTTTTCTGGCTTGCAAAGCTTGCAAGATTTGAGCTTGAGGGATAACTCTTTCACGGGTTCTGTTCCTGGTTCATTGGTGGGACTTAAGTCACTTAAAGTTGTGAACTTGACCAATAACTTGTTTCAGGGACCAGTGCCTGTGTTTGGTTCTGGGGTTGAGGTGGATTTGGAAAAGGATTCTAATAGTTTTTGTTTGCCAGGTCCTGGTGATTGTGATCCTAGGGTGAAGATTCTGCTTTCTATTGTTCGGTCTTTTGGGTATCCCAAAAGGTTTGCTGAGAATTGGAAAGGGAATAATCCATGTGCTGATTGGATTGGGATTAGTTGTAGTGATGGGAACATCACTGTTGTTAATTTTCAGAAGATGGGACTTAAGGGTACTATATCATCAGAGTTTGCCTCACTTAAATCACTGCAAAAACTTGTGCTTGCTGATAATAATCTCACAGGTTCAATTCCTAAGGAGCTTACCGCTCTTCCTGGGCTAACTGAATTGAATGTTGCAAACAATCTGCTTTATGGAAAAATCCCAAGTTTTAAGAGCAATGTGATTATTACCTCTAATGGTAACAAGGATATAGGGAAGGATAAACCTAGCACATCCCCTATAGGTCCACTATCACCAAACTCAACGGCTCCAAACACAAAGGAAGAAAATGGAAGCAAAAAATCTTCACATGTTAGAGTAGTTGTGTTTGCTGTGATTGGGGGTGTAGTGTTGGTTTTGGTGATTGGTTTCTTAGTTTTCTGTTTGCTTAGGATGAAACAAAAACGGCTAAGTAGGGTGCAGAGTCCAAATGCATTGGTTATTCATCCACGTCATTCTGGATCAGATAATGAAAATGTGAAGATAACAGTTGCAGGTTCAAGTGTGAGGGTTGGTTCTGTTAGTGAAACACAAACTCTGCCAAGCAGTGAGGGAGGGGACATCCAGATGGTTGAATCAGGAAACATGTTCATCTCTATACAAGTATTGAGGAATGTCACTGACAATTTCAGTGAGAAAAACATATTGGGACAAGGAGGTTTTGGAACTGTTTACAAAGGTGAATTGCATGATGGTACAAAAATTGCAGTGAAAAGAATGGAGTCTGGGGCAATAACCGGGAAAGGTGCAACAGAATTTAAATCTGAAATTGCTGTTTTGACTAAGGTTCGCCACCGGCATCTTGTTTCTCTTATTGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTATGAGTATATGCCTCAGGGGACATTGAGTAGGCATCTTTTTAACTGGCTAGAAGAAGGACTGAAACCATTGGAGTGGAATAGAAGATTGACCATTGCCTTAGATGTGGCAAGGGCTGTTGAGTACCTGCATAGCTTGGCTCATCAAAGCTTTATACATAGGGACTTAAAGCCTTCAAACATTCTCCTTGGAGATGATATGAGGGCAAAGGTTTCTGATTTTGGTCTTGTACGTCTTGCTCCCGAAGGAAAAGCATCGATAGAAACAAGAATTGCAGGAACTTTCGGATATTTGGCACCAGAATATGCAGTTACTGGTCGTGTGACAACTAAAGTCGATGTGTACAGCTTTGGTGTGATATTGATGGAACTGATAACCGGAAGGAGAGCACTTGATGAGACTCAACCAGAGGATAGCATGCACCTTGTAACATGGTTCAAGAGAATGTACATAAACAAGGACACATTCCGCAAGGCCATTGACCCAACAATCGATCTCAATGGGGAAACACTTGCGAGTATTCACACTGTAGCTGAGTTAGCTGGTCACTGCTGTGCAAGGGAACCATATCAAAGGCCTGATGCTGGTCATGCAGTTAATGTTCTTTCTTCCCTTGTAGAGCTATGGAAACCATCTGATCACAATTCTGAAGATATATATGGCATTGACTTAGACATGTCTTTACCACAAGCACTAAAGAAGTGGCAAGCTTATGAAGGTAGAAGCCAAATGGAATCTTCTTCTTCTTCACTCCTTCCTAGCTTGGATAACACACAAACAAGCATTCCTACAGGTCCATATGGATTTGCTGAGTCTTTCACATCAGCAGATGGTAGATGA 2838 0.4253 MRNKMTHTAKFKTFPILLTGFLSLFLYVHSQPTSQDAPAMLALRNSLNPPKSLGWSDPDPCKWNHVVCSEERVTRIQIGHQGLQGTLPNGTTLQSLTELERLELQFNNISGPLPSLNGLSSLQVLILSNNHFTSIPHDFFSGMSQLQSVEIDNNPFESWEIPDSIKNASSLQNFSANSANIMGKIPDFWSLLPGLTHLHLAFNNLEGVLPLSFSSLQVQTLWLNGQKGGGLGGTVEILQNMTSLTQLWLHSNAFTGPLPDFSGLQSLQDLSLRDNSFTGSVPGSLVGLKSLKVVNLTNNLFQGPVPVFGSGVEVDLEKDSNSFCLPGPGDCDPRVKILLSIVRSFGYPKRFAENWKGNNPCADWIGISCSDGNITVVNFQKMGLKGTISSEFASLKSLQKLVLADNNLTGSIPKELTALPGLTELNVANNLLYGKIPSFKSNVIITSNGNKDIGKDKPSTSPIGPLSPNSTAPNTKEENGSKKSSHVRVVVFAVIGGVVLVLVIGFLVFCLLRMKQKRLSRVQSPNALVIHPRHSGSDNENVKITVAGSSVRVGSVSETQTLPSSEGGDIQMVESGNMFISIQVLRNVTDNFSEKNILGQGGFGTVYKGELHDGTKIAVKRMESGAITGKGATEFKSEIAVLTKVRHRHLVSLIGYCLDGNEKLLVYEYMPQGTLSRHLFNWLEEGLKPLEWNRRLTIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRRALDETQPEDSMHLVTWFKRMYINKDTFRKAIDPTIDLNGETLASIHTVAELAGHCCAREPYQRPDAGHAVNVLSSLVELWKPSDHNSEDIYGIDLDMSLPQALKKWQAYEGRSQMESSSSSLLPSLDNTQTSIPTGPYGFAESFTSADGR* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03467 945 Gene3D Transferase(Phosphotransferase) domain 1 670 889 - -
Rops11g03467 945 MobiDBLite consensus disorder prediction 911 945 - -
Rops11g03467 945 CDD STKc_IRAK 598 871 - -
Rops11g03467 945 Pfam Leucine rich repeat N-terminal domain 336 370 IPR013210 -
Rops11g03467 945 Pfam Leucine rich repeat N-terminal domain 35 69 IPR013210 -
Rops11g03467 945 FunFam receptor protein kinase TMK1 670 887 - -
Rops11g03467 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Rops11g03467 945 FunFam receptor protein kinase TMK1 554 669 - -
Rops11g03467 945 FunFam Leucine-rich repeat receptor-like kinase 333 456 - -
Rops11g03467 945 Pfam Leucine rich repeat 98 155 IPR001611 GO:0005515
Rops11g03467 945 Pfam Protein kinase domain 593 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03467 945 SUPERFAMILY L domain-like 335 441 - -
Rops11g03467 945 Gene3D Ribonuclease Inhibitor 33 331 IPR032675 -
Rops11g03467 945 Gene3D Phosphorylase Kinase; domain 1 553 669 - -
Rops11g03467 945 SMART serkin_6 592 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03467 945 MobiDBLite consensus disorder prediction 462 478 - -
Rops11g03467 945 PANTHER OSJNBA0070M12.3 PROTEIN 21 945 - -
Rops11g03467 945 SUPERFAMILY Protein kinase-like (PK-like) 568 876 IPR011009 -
Rops11g03467 945 FunFam Receptor-like kinase TMK4 34 329 - -
Rops11g03467 945 MobiDBLite consensus disorder prediction 450 481 - -
Rops11g03467 945 SUPERFAMILY L domain-like 45 309 - -
Rops11g03467 945 ProSiteProfiles Leucine-rich repeat profile. 121 142 IPR001611 GO:0005515
Rops11g03467 945 ProSitePatterns Protein kinases ATP-binding region signature. 598 620 IPR017441 GO:0005524
Rops11g03467 945 MobiDBLite consensus disorder prediction 911 934 - -
Rops11g03467 945 ProSiteProfiles Protein kinase domain profile. 592 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03467 945 SMART LRR_typ_2 241 263 IPR003591 -
Rops11g03467 945 SMART LRR_typ_2 264 287 IPR003591 -
Rops11g03467 945 SMART LRR_typ_2 192 215 IPR003591 -
Rops11g03467 945 SMART LRR_typ_2 119 142 IPR003591 -
Rops11g03467 945 SMART LRR_typ_2 96 118 IPR003591 -
Rops11g03467 945 SMART LRR_typ_2 395 419 IPR003591 -
Rops11g03467 945 Gene3D Ribonuclease Inhibitor 333 457 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03467 Rops-Chr11 66548350 66552121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03467 97 874 Receptor kinase-like Gene Family AT5G07280 31.807 7.34e-84 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Rops11g03467 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03467 K00924 - gmx:100813768 1486.09