Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03462 ATGCCCTTGGAAGGGATTTTCATTGAACCCACTTCAACAACTACTCCTGATCTTTCCCTTCATATAAGTCCACCAAGCACTTCTTCATCTTCCTCTTCTTTGATTTGCAACAACAACACCAACCAAGGTTCTAATTATGAGGCTCAGAATCCATCAACCTCTAATTTCCCTTCAAGGACAGTGTCTCAAGCTCACACTGAGCTTTCTCTTGGAAGGAATTTCAGTGGTGTTGAGGAACCAACACAGTACAACAACCCTTATTATCAAGGCCAACAGGTCCATCTTCATCACCACTCTAACACTACTACTAGTGCTGCTGCAACAACAACAACAACAACAACTAGTGCTACTCACTTGAATCACATAAATTATGGGGTTTCATTGCTTGATGTCTCATCATCAGAAGGATTGAGGCCAATCAAGGGGATTCCGGTGTATCACAACCGTTCATTCCCTTTCTTGCCCATGGAACATTCAAGAGACAAGGATCAACAGCATCCCAAGATGTGCTTATATCATCACATCCCTTCTTGTTCCTCTTTGTGTTCTTCTTCTTCTACTTCTTCCTCTCCTTCTTCTCCTTCACCCTACTTCACAGGGGGTTTGGATCCCATGTCCTTTTTGAACTCCGGTGGCTCCACGGCGGCGTATAGGGCCGCCGCCGTCACAAGGTTTAATGGGATTTCCGGTGAGCCTTTCAAATCTCATCCATTGCACCATCACTCACACTATGGGATTGGACTTGGGCCCTCTCATGAACCCTCTTCTGGGTTGATGAGATCAAGGTTTTTGCCAAAGTTACCAACAAAGAGGAGCATGAGAGCACCCAGAATGAGATGGACAAGCACACTCCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGGGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTCGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCTTCTTCAGGTCTTTCAGATGGATCAGGAGAGGATGACATGTCTCCAATGGGTAACAATGGTGGTTTGCGTCAATTTCAAGATCAAAGAGGCCTAGTGGATAGGCCAGTGCAACAAGATATGGACTATTCTTCCACCACCACTCTATGGAGTAATTCATCAAGTAGAGAGCCATGGCCACAAACTAGTTCTAACGATGTAGATGGATTCAAACCAACTATCTTCCAGTCACAACCAATATCAAGAGGACATCAAATTCAGGAGTGTGATTCAACCCAAATCAAGAACAGTTTGTCAGGATCTAATTTTGAGTGTAAGAACCCAAGCTTGGAGTTCACATTAGGGAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1389 0.4449 MPLEGIFIEPTSTTTPDLSLHISPPSTSSSSSSLICNNNTNQGSNYEAQNPSTSNFPSRTVSQAHTELSLGRNFSGVEEPTQYNNPYYQGQQVHLHHHSNTTTSAAATTTTTTTSATHLNHINYGVSLLDVSSSEGLRPIKGIPVYHNRSFPFLPMEHSRDKDQQHPKMCLYHHIPSCSSLCSSSSTSSSPSSPSPYFTGGLDPMSFLNSGGSTAAYRAAAVTRFNGISGEPFKSHPLHHHSHYGIGLGPSHEPSSGLMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDMSPMGNNGGLRQFQDQRGLVDRPVQQDMDYSSTTTLWSNSSSREPWPQTSSNDVDGFKPTIFQSQPISRGHQIQECDSTQIKNSLSGSNFECKNPSLEFTLGRPDWNGKGQA* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03462 462 Gene3D - 275 332 - -
Rops11g03462 462 MobiDBLite consensus disorder prediction 382 411 - -
Rops11g03462 462 MobiDBLite consensus disorder prediction 331 362 - -
Rops11g03462 462 FunFam Myb family transcription factor 274 332 - -
Rops11g03462 462 NCBIfam myb-like DNA-binding domain, SHAQKYF class 276 329 IPR006447 GO:0003677
Rops11g03462 462 SUPERFAMILY Homeodomain-like 273 329 IPR009057 -
Rops11g03462 462 MobiDBLite consensus disorder prediction 8 56 - -
Rops11g03462 462 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 459 IPR044847 GO:0000976|GO:0006355|GO:0010158
Rops11g03462 462 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03462 Rops-Chr11 66401629 66406761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03462 1 459 G2-like Transcription Factor Family AT5G16560 40.891 5.55e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops11g03462 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03462 - - ccaj:109796302 664.07