Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03450 ATGGCACCTGTTTCATTGCCTCCTGGGTTTAGGTTCCACCCCACCGATGAAGAACTAGTTGCTTATTACCTCAAAAGAAAGATAAATGGTCGTAAAATTGAGTTGGAGATCATCCCTGAAGTTGATCTCTACAAGTGTGAACCATGGGATTTACCAGGGAAGTCATTGTTACCAGGAAAAGATTTGGAGTGGTATTTCTTTAGCCCTCGAGATAGGAAGTACCCAAATGGATCAAGAACAAACCGTGCAACAAAATCTGGATATTGGAAGGCCACAGGGAAAGATCGAAAGGTGAACTCTCAGACTCGTGCTGTAGGAATGAAGAAAACCCTAGTTTACTATAGAGGAAGGGCACCACATGGAACTCGAACAGGTTGGGTTATGCATGAGTATCGTCTTGATGAGAGAGAATGTGAAACTGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGGGTGTTCAAGAAAACTGTAGTGACTGCCCCAAAAGTTGCGGAGCAGTATGTTAACGTTACCAGCCATGCAAATCATCAGATTACAAGAAGTGATCAATCATCAAGCATGGAGTTATACTCTGAAGGAAGAGGTGAAGTTTTAGAGAGCTCAAATTATTTGATGCCATGGGATACATGCTCAACCCAAAACATAAATGGGAATGCTATTAATATCAATGGTGGCACAAGGGATAATGGGATATGGTCAAACTATTTATCAGAAGACTTACTCAATCTTCCAACATCATCTTCATTTCCCAATTTTGGAGCCATACCTTACCCTCCATCCAAGGTGGATATAGCACTAGAGTGTGCAAGGATGCAGCATAGGTTTTCCATGCCTCCATTGGAGGTGCAAGACTTCCCTCAAGTTGGCATTTCTGAGCTTAAGATGACACAAGCCTCGGGTTCTACATGTGGAGGCAGCAGAAATGAAACAGATATCTTGCAGGAAATTCTTTCAGTTGCTCATGCTTCCCAAGAATTGATAAATCAATCTAACTACTCACCAACATTGGGTGGCAATGAAAATTATGGTGCTCATGAAAATGATTTTACTTTTATGGTTGACACTAACTACAATCATGTGAATGACATGAACTCCATGAGATATGTTGACAATGCATGGGAAGATCCAAACACAAGATCAATAGAGATAGGGGCTCTTGAAGATGAATTCAAGGCAGAGAGGATGGTAGAGAATTTAAGATGGGTTGGAATGTCAAGCAATGATTTAGGAAAGGGTTTTATGGAAGAGCAAAAGGTTGTTCCAATTGAGGATATTTCAAGCTTCCAAACAAACAGGGAAGAGAATGAGGTGGCAGGAGAATCTGAGCAACACAATAGCAACAAAGAACTCAATGATACCGACATTGACAATTTCTCATTGGAGTTCATCAATGATGATGACAACATTGATTATTCAAATTCCACAAGCTTTGAGGTTGTTGAGGAAACAAAAGTGAGTCATGGAATGTTTGTTTCAACTCGTCAAGTAGCAGATACATTCTTCCATCAAATAACTCCTTCACAAACCATCAAAGTTCAACTCAATCCAGTGATGGAGAACAAACAATCTATAGAGAATGCAGAGACACAGATTATACTGAACAAGAACCAAGGCAACTCTTTCTATAAGAAGTTTAAAACCTATGTGATGGGGAAGCTGAAAAAGCCATCAAAGACAATAGCAAGTGCCCTTGTATTCATCTTTGCACTTTTGTTCATGCATTTTGTTTATTTGAAGGAGCAAGTGGAAGATTGGAAATCAGACCAAGAGGATGTGAAAAAGAATTGTTGTTGTAATGCTAACAGCATCAAGAGAATGAGACAACAACCAGCTGAGAAAATCACATGGAATGAGCAAGAAAATATTTGGTTTGTTGGTATCAAAAGTGGGAATGGATTTAGTGTGGTATTGAAGAAGATAGGCATTTTCCTAACCATATCTTTGGCTCTTTGTACCATGTGGGCTAACCACATCATAGTTAATCCTTGA 1992 0.3986 MAPVSLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQTRAVGMKKTLVYYRGRAPHGTRTGWVMHEYRLDERECETASGLQDAYALCRVFKKTVVTAPKVAEQYVNVTSHANHQITRSDQSSSMELYSEGRGEVLESSNYLMPWDTCSTQNINGNAININGGTRDNGIWSNYLSEDLLNLPTSSSFPNFGAIPYPPSKVDIALECARMQHRFSMPPLEVQDFPQVGISELKMTQASGSTCGGSRNETDILQEILSVAHASQELINQSNYSPTLGGNENYGAHENDFTFMVDTNYNHVNDMNSMRYVDNAWEDPNTRSIEIGALEDEFKAERMVENLRWVGMSSNDLGKGFMEEQKVVPIEDISSFQTNREENEVAGESEQHNSNKELNDTDIDNFSLEFINDDDNIDYSNSTSFEVVEETKVSHGMFVSTRQVADTFFHQITPSQTIKVQLNPVMENKQSIENAETQIILNKNQGNSFYKKFKTYVMGKLKKPSKTIASALVFIFALLFMHFVYLKEQVEDWKSDQEDVKKNCCCNANSIKRMRQQPAEKITWNEQENIWFVGIKSGNGFSVVLKKIGIFLTISLALCTMWANHIIVNP* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03450 663 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Rops11g03450 663 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Rops11g03450 663 MobiDBLite consensus disorder prediction 433 452 - -
Rops11g03450 663 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 214 - -
Rops11g03450 663 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Rops11g03450 663 FunFam Nac domain-containing protein 86 15 159 - -
Rops11g03450 663 MobiDBLite consensus disorder prediction 436 452 - -
Rops11g03450 663 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03450 Rops-Chr11 66190782 66195531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03450 1 654 NAC Transcription Factor Family AT1G65910 44.659 3.29e-166 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops11g03450 NAM 6.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03450 - - gmx:100818019 1017.68