Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03449 ATGACACTGGGAGAAGAGTCCTTGGCAGGAGTCCCATTTGACAGAACTGTTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATATTTACTAAAGTGTGGTCGTAGAGGAAAACCAAAGCTCTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATTTGGTACTCAGGCCAGCAGGAAAAACACTTGCGATTGAGTGTAGTTACAAAAATTATTCAAGGGCAGGGTAATGTAAGGTCCCAGAGGCAAAATGAACCTGAAAAGGAGTGCCATTCATTTTCACTAATCTATGCTAATGGTGAACGCTCTCTTGATCTGATTTGCAAGGACAAAGCACAGGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTGATTTCTAGGTGCCAGCATCCTAGAGCTCTTAGTAGTTTAAGAAGCTGCAAAGGGGTGCAGAGTTGTGTTAGTAGTCCAGCTGGAATCTTAAGAAGAAAGAAAAATCTTGGCCTTCTGGATGACACCTCTCAATTCACTCAGGTACACAGCGTATGTGCAAGTCCTACTTTGTCACTTTCAGAAAGGTGCTTTTCTGATGGCTTGTCATGTACATCTGATAACTTTTATTCATCGGCATCTTTCCTCTCCAGCACTCATGGCATAACAGATAATTCAGTCCCAAGTTCTCCATATATTGATCCAGATATTCATAGCAAGATTGAATCAACACGTGTTGACAAGGAGTACAAGAAGGATTTGTCCTACAGGTCTCTGATGCCTCCTACCACCCCACATGTAGGAAACAACAATGTATTAAGGGATGTAATGGTATGGGGTGGAGGGATTGGATGTCTTGTTGGTATTGTCAATGAAAGGTTTGTCCAAAATAGAATTTATTCTTTAGTGCCAAAGTTACTGGAATCCACTGCTATGTTAGATGTACAAAATATAGCATTAGGAGAAAAACATGCTGCCTTAGTTACAAAACGAGGGGAAGTGTTCTGTTGGGGTCAAGGGAAGTGGGGAAGGTTGGGGCAAAAAATTGATATGGACATTAGCTCCCCCAAAATAGTTGATTCTCTTAGTGGTATTCATGTAAAACATGTTGCCTGTGGTGAGTATCATACATGTGCTTTGACAGATTCTGGTGAAGTATATACATGGGGCAATGATGTTTGTTGTTCAGATTTGGTTGATGAAGGGAGAATTAGATGTCAGTGGATACCACATAAACTTTCTGGACCTTTAGATGGTATTAGTATTTCAAGTGTTGCTTGTGGGGAATGGCATACAGCTATTGTCTCTAGCTGTGGGAGGTTATTTACATATGGAGATGGTACATTTGGAGTTCTTGGTCACGGGGATCTTAGGAGCTTTTCTAAACCAAAAGAAGTTGAATCTCTTAGTGGTCTAAAGGTGAGGTCTGTTGCTTGTGGATCATGGCATACAGCTGCTATTGTTGAAGTCATGTTTGACCGTTTTAGGTACAATACTGCTATTGGTAAGCTGTTTACTTGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATGGAAGCAAGCTTATACCAACATGTGTTTCACAACTTGTTGACTATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTTACTAACATGGGTAAGGTTTTTGCAATGGGAAGTGCAAAACATGGACAGCTTGGAAATCCACATGCCAGGGATAATAAAGCAGTTATGGTTGAAGGACAACTTAAACAAGAGTTTGTTAAAGTGATATCGTCTGGTTCATATCATGTTGCTGTTTTGACATCTGCAGGGAGTGTCTATACATGGGGCAAGGGTGAAAATGGTCAACTTGGGTTAGGTGATACTGAAGATAGACACACACCTTGTTATGTTGAGGCTCTAAGAGATAGGCAGGTAGGTACTATTACTTGTGGTCCAAGCTTCACAGCTGCAATATGTTTGCACAAACCTATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGGTTCACAAGGAAGAAGCATAACTGTTATAACTGTGGTATTTTGTTCTGCCGTGCTTGTAGTAGTAAAAAGGTTATAAATGCATCTCTAGCCCCAAGTAAGAGCAAGGCCTTTCGGGTTTGTGATCAGTGTTTTGATAAACAGCAAAGAAATACACATTCAGATATGGCATCAAAGTCCAGAAATTACAACACTCAGCAGCTACTGAAGCATCAGAATAAAATTGCTGATGTGACAGAAGATAGGGGAGAAACAACGGTGACACAAGGTCCTTTGTTGTCTCTCAGTCAATCATGTTACAGGAAAAGCATGCCTAGTGGAAGGAAGGATTGGAAAAACCAACAAGAAAACCAGCAGGACTTACAAGATAGTTCTTCTATGTTAGGGAGAGTGTCACAATGGGGGCAAGTTCAATGCCCTCCCCTATTTAAAATCAATTCTACTGAAAATTCAGCTGTGCATGATTCTTCATCCAAAAATAAATTAGCTAGTGTTTCACTACTGAATATAGAATCTAGAGTATACAACTTCCCTAATGCAGGGACAGATTCAACAAAGTCTGATAAGATGCTCATAGAAGAAGTTCAGAGGCTGAGATCTGAGGCAAGGAGACTTGAAGAGCAGTGTGAGCTCAAAAACAAAAAAATAGAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTTAGTGGCGAGGGAGGAAGCTGCTAAGTGCAAGACAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCATACAATATCAGGAAAAGATAATACTGGACAAGAAGGAAAGGTTGGATTACAAGAATTTCTTCCTAATTTGGCACCCATACAAACAGATATGAATAGTCCAAGAGATGGTAACATGGACAGTCTCTCAAATTCCCCTATAGTATTCTCTGACACATTAAAATCCAAATTTGGGAGAAGTATGTTCCTCAAAAATGATAGATTGATGGAGAATTCTAACTGCACTAGACCAGAATCTCAACAAGACAGTGCAGATGGCTTGAAGGTTGAATGGGTGGAACAGTATGAACCTGGTGTTTACATCACATTTACAACCTTGCCATGTGGGAAAAAGGGCCTCAAGCGAGTGAGATTTAGCCGGAAGAAATTCTCACAGAAGGAAGCTGAAAGGTGGTGGGAAGAGAATCAAGCAACAGTATACCATAAGTATGAGATTGAAGGATATATGAACACTAGCCAAAGTCAGGTGAAAGGCTAA 3228 0.4055 MTLGEESLAGVPFDRTVEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDERNLIWYSGQQEKHLRLSVVTKIIQGQGNVRSQRQNEPEKECHSFSLIYANGERSLDLICKDKAQAASWFVGLKAVISRCQHPRALSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGLSCTSDNFYSSASFLSSTHGITDNSVPSSPYIDPDIHSKIESTRVDKEYKKDLSYRSLMPPTTPHVGNNNVLRDVMVWGGGIGCLVGIVNERFVQNRIYSLVPKLLESTAMLDVQNIALGEKHAALVTKRGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLSGIHVKHVACGEYHTCALTDSGEVYTWGNDVCCSDLVDEGRIRCQWIPHKLSGPLDGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGDLRSFSKPKEVESLSGLKVRSVACGSWHTAAIVEVMFDRFRYNTAIGKLFTWGDGDEGRLGHADNGSKLIPTCVSQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKHGQLGNPHARDNKAVMVEGQLKQEFVKVISSGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRHTPCYVEALRDRQVGTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGILFCRACSSKKVINASLAPSKSKAFRVCDQCFDKQQRNTHSDMASKSRNYNTQQLLKHQNKIADVTEDRGETTVTQGPLLSLSQSCYRKSMPSGRKDWKNQQENQQDLQDSSSMLGRVSQWGQVQCPPLFKINSTENSAVHDSSSKNKLASVSLLNIESRVYNFPNAGTDSTKSDKMLIEEVQRLRSEARRLEEQCELKNKKIEECQQKIEESWLVAREEAAKCKTAKEVIKALALRLHTISGKDNTGQEGKVGLQEFLPNLAPIQTDMNSPRDGNMDSLSNSPIVFSDTLKSKFGRSMFLKNDRLMENSNCTRPESQQDSADGLKVEWVEQYEPGVYITFTTLPCGKKGLKRVRFSRKKFSQKEAERWWEENQATVYHKYEIEGYMNTSQSQVKG* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03449 1075 ProSiteProfiles BRX domain profile. 1006 1061 IPR013591 -
Rops11g03449 1075 MobiDBLite consensus disorder prediction 769 790 - -
Rops11g03449 1075 Gene3D - 16 133 IPR011993 -
Rops11g03449 1075 SMART fyve_4 647 716 IPR000306 GO:0046872
Rops11g03449 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 596 IPR000408 -
Rops11g03449 1075 Pfam Transcription factor regulating root and shoot growth via Pin3 1006 1060 IPR013591 -
Rops11g03449 1075 Coils Coil 854 888 - -
Rops11g03449 1075 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 653 715 IPR017455 -
Rops11g03449 1075 Gene3D - 392 654 IPR009091 -
Rops11g03449 1075 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Rops11g03449 1075 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Rops11g03449 1075 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Rops11g03449 1075 PRINTS Chromosome condensation regulator RCC1 signature 592 613 IPR000408 -
Rops11g03449 1075 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Rops11g03449 1075 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Rops11g03449 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 727 IPR013083 -
Rops11g03449 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Rops11g03449 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 493 541 IPR000408 -
Rops11g03449 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 374 425 IPR000408 -
Rops11g03449 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 597 645 IPR000408 -
Rops11g03449 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Rops11g03449 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Rops11g03449 1075 SUPERFAMILY PH domain-like 16 126 - -
Rops11g03449 1075 SUPERFAMILY FYVE/PHD zinc finger 654 723 IPR011011 -
Rops11g03449 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 597 648 IPR000408 -
Rops11g03449 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Rops11g03449 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Rops11g03449 1075 CDD PH_PLC_plant-like 15 127 - -
Rops11g03449 1075 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 61 918 - -
Rops11g03449 1075 Gene3D - 259 391 IPR009091 -
Rops11g03449 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Rops11g03449 1075 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Rops11g03449 1075 CDD FYVE_like_SF 658 711 - -
Rops11g03449 1075 Pfam FYVE zinc finger 655 714 IPR000306 GO:0046872
Rops11g03449 1075 SUPERFAMILY RCC1/BLIP-II 265 649 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03449 Rops-Chr11 66176966 66184650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03449 1002 1065 Major Intrinsic Protein MIP AT1G31880 48.438 4.59e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03449 - - gmx:100797223 1889.39