Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03448 ATGTCAATTGGAGAGTTGATCTCAATCTCCATCACAATAACATTAACAATTCTATTCACACTCACTTCACCAGCAACCTCTCATTTCTATTCACCATCACCACCAGCCGCTCCATTCTCCGAATCTTCCCCTCAATCTCCCTCTCCACCCCCCGCCGAATGGCTCTCCGCACGTGCCACCTACTACACCGCCTTGGACCCCACCGACTCTATCAGCGGTGCGTGCGGCTACGGCGACCTTCGTAGGGACGGTTACGGTTTCGCCACTGCAGGACTCAGTCAGGCACTCTTCGGCCGCGGCGAGATCTGTGGTGCGTGCTATGAGCTCCGGTGTCTTGAGGAGGAAGCTGCCTTCGACCGGCGGTGGTGCATCGCCGGAACCTCCATCATCGTAACCGCCACCAATTTCTGCGCACCTAACTACGGCTTCGATGCAGATAGTGGTGGAGGACACTGTAACCCTCCGAAACAGCACTTGGTGCTTCCCATTGAAGCGTTCGAGAAGATCGCGATTTGGAAAGGTGGGGACATGCCTGTGCAGTATCGAAGGATAAAGTGCAGAAGAGAAGGGGGAATGCGGTTTACAATTAGTGGTTCTGGCATCTTCATTTCGGTGTTGATTAGTAATGTGGCTGGCAGTGGAGACATTGTTGGTGTGAAGGTGAAAGGTTCAAGAACTGGTTGGCTTCCTATGGGTCGGAATTGGGGTCAAAACTGGCATGTAAATGCTTTACTACAAAACCAACCTCTTTCATTTGAGGTTACTGGTAGTGATGGAATAACAGTTACATCTTACAATGTTGCTCCCAGGAATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTCGAGTCTTGA 858 0.5093 MSIGELISISITITLTILFTLTSPATSHFYSPSPPAAPFSESSPQSPSPPPAEWLSARATYYTALDPTDSISGACGYGDLRRDGYGFATAGLSQALFGRGEICGACYELRCLEEEAAFDRRWCIAGTSIIVTATNFCAPNYGFDADSGGGHCNPPKQHLVLPIEAFEKIAIWKGGDMPVQYRRIKCRREGGMRFTISGSGIFISVLISNVAGSGDIVGVKVKGSRTGWLPMGRNWGQNWHVNALLQNQPLSFEVTGSDGITVTSYNVAPRNWTFGQTFEGKQFES* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03448 285 Gene3D - 192 283 IPR036749 -
Rops11g03448 285 PRINTS Expansin/Lol pI family signature 53 68 IPR007118 GO:0005576
Rops11g03448 285 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Rops11g03448 285 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Rops11g03448 285 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Rops11g03448 285 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Rops11g03448 285 PRINTS Expansin/Lol pI family signature 266 280 IPR007118 GO:0005576
Rops11g03448 285 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Rops11g03448 285 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Rops11g03448 285 PRINTS Expansin signature 237 258 IPR002963 GO:0009664
Rops11g03448 285 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Rops11g03448 285 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Rops11g03448 285 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Rops11g03448 285 PRINTS Expansin signature 266 282 IPR002963 GO:0009664
Rops11g03448 285 PANTHER EXPANSIN-A15 14 283 IPR002963 GO:0009664
Rops11g03448 285 CDD DPBB_EXPA_N 53 186 - -
Rops11g03448 285 Pfam Lytic transglycolase 90 181 IPR009009 -
Rops11g03448 285 SMART dpbb_1 89 181 IPR007112 -
Rops11g03448 285 SUPERFAMILY PHL pollen allergen 188 280 IPR036749 -
Rops11g03448 285 Gene3D - 39 187 IPR036908 -
Rops11g03448 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 191 IPR007112 -
Rops11g03448 285 SUPERFAMILY Barwin-like endoglucanases 53 209 IPR036908 -
Rops11g03448 285 Pfam Expansin C-terminal domain 192 269 IPR007117 -
Rops11g03448 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 280 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03448 Rops-Chr11 66150572 66154384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03448 53 285 Expansin Gene Family AT3G03220 75.107 1.10e-132 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03448 - - tpra:123916217 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03448 11 66150572 66154384 Rops11g03448 11 66150572 66154384 ECH