Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03447 ATGGCGATTCATGATCAAAATGGATTTACTAGATCAAGGGTTGGTTCTCCAGTAGGAAATGGAGTGTCTTTGAGTTCTGCACCGCATTCAGTTACATATGTGCAACTTAATGATCAATTTTCTTGCGGGAATGACCATGCTCTGAAGGTAAGGAAACCATATACCATTACTAAACAGAGAGAGAGATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAACTGCATGGCCGGGCCTGGCGACGTATTGAAGAGCATGTTGGTACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGACTCTAGTGGGAACATTACAAACAAAGTGGAGTCAATTGAAATTCCACCTCCAAGACCAAAACGAAAGCCAATGCATCCTTACCCTCATTTTGATCAAGAAAACCAGTCTCCCAAATCAGTTTTATCTACAGTTGGTTCAGGCAGCCTTGGTTCCTCTGATTCAGATGCACCAAATGGAAGCTTATCCCCCATGTCATCAATGAGTGGTGTCCATACAAGTGGTTTTACACTTGCTGAACCTAAAACACCATCAGAGGAAGCTGTGCTAAATGCTGATTTGGCTCATGATGAGAAACCTCTTATGAAATTCGAGCTTCTCCCAAGTGAAAGTGTTTCTGTCAAAGAAGACACAGCAGAAGAATCATCTACTCGTACTCTCAAACTTTTTGGGATGACTCTAGTTGTAACAGATACATGCAGACCATGTCCTCCAACAATTGAGGCATGCAAACCAATGCCTCTAGACATACGTGTGCATTGCCTTAACAAGGGGGATGGAAAATTGGAACTTATTGGCCAAAGTACACCAAGTGAAACATCAGCAATATCCCAGTTAAGGGTGAGAGTGAGACCTGAAACATGTGGTAAAGGGTTTGTGCCATATAAAAGACTACAGCTGTTTCAGCTACTAGATGAGCTGGTATATGAGAGGGGGAGGAAGAAAAGGCGAGCTGTAAACTTTGACATTTCTGATGCATTGCAAATTCTCCAGCTGTTCAAATCCACAAACCTGCCTTTTGTATTTTTTTGA 1083 0.4174 MAIHDQNGFTRSRVGSPVGNGVSLSSAPHSVTYVQLNDQFSCGNDHALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSSGNITNKVESIEIPPPRPKRKPMHPYPHFDQENQSPKSVLSTVGSGSLGSSDSDAPNGSLSPMSSMSGVHTSGFTLAEPKTPSEEAVLNADLAHDEKPLMKFELLPSESVSVKEDTAEESSTRTLKLFGMTLVVTDTCRPCPPTIEACKPMPLDIRVHCLNKGDGKLELIGQSTPSETSAISQLRVRVRPETCGKGFVPYKRLQLFQLLDELVYERGRKKRRAVNFDISDALQILQLFKSTNLPFVFF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03447 360 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Rops11g03447 360 Gene3D - 62 108 - -
Rops11g03447 360 MobiDBLite consensus disorder prediction 125 139 - -
Rops11g03447 360 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Rops11g03447 360 SMART sant 59 107 IPR001005 -
Rops11g03447 360 MobiDBLite consensus disorder prediction 118 189 - -
Rops11g03447 360 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Rops11g03447 360 MobiDBLite consensus disorder prediction 1 21 - -
Rops11g03447 360 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Rops11g03447 360 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Rops11g03447 360 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Rops11g03447 360 PANTHER SWI/SNF COMPLEX-RELATED 37 260 - -
Rops11g03447 360 MobiDBLite consensus disorder prediction 143 189 - -
Rops11g03447 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Rops11g03447 360 CDD SANT 62 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03447 Rops-Chr11 66143614 66146723 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops11g03447 Myb_DNA-binding 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03447 - - gmx:780539 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03447 11 66143614 66146723 Rops11g03447 11 66143614 66146723 ECH