Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03429 ATGATGGCGACTTCATCGGAATCTAATGGAGTTGTGAATGGTGAAGACAAGAATAATGTTAAATCAGAAGATGACGGCGTTACTTTAGCCATGCAATGGGCATGTTCAATGGTGTTGCCCTTGACTTTGCAGTCAGCAATTGAGCTTGGCATCTTCAACATCATTGCTAAATCTGGTGAAGGTGCCAAACTCTCTGCAAAGGACATTGCAGTTCAGATTGGCACCAACAACCCAGAAGCACCCATCATGCTGGATCGTCTTCTTAGGCTCTTGACTAGTTACTCCATCCTACATTGCTCTTTCTCTGAAGATACTCAAAGGTCCCAACTTCTTTATAGTCTCACCCCTGGTTCCAAATACTTTGTGACCGATGCTGATGGTGTCTCACTTGGCCCCTTCTTGACCTTAAATATGGACAAGGACTTCTCCAAATGCTGGATTGGACTAAATGGAGCGATCCAAGAAGGTGGTATGCCATTCAACAGGGTTTTTGGCATGCATTTATTTGAATATACAAAGGTAGATCCCAGGGCTAATGAGGTCTTCAACATAGGTATGCTCAGCTCCGCCACTATAATTGTGAAGACGGTTCTTGAACGCTACACAGGGTTTGAACAAATTAATACACTGGTGGATGTTGGTGGTGGTCTTGGGTTTAATCTCAAATTGATCACTTCCAAATACTCTCACATTCAAGGTGTTAATTTTGACTTGCCTCATGTCATTAAGCATGCTCCCGTCTATGATGGCGTGGAGCATATAGGGGGAGATATGTTTGAGAGCATTCCTAAAGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAATACTGCCTAAAGCTCTTGAAGAATTGCTATAAGGCCATTCCTGATGATGGAAAGATTATCGTCGTGGACACCATTCTTCCAATTGTGCCTGGGACAACAGCTATTGACAAGGTTGCTTCCTCATTTGATGTCTTCATGTTGACTGGATGCCCAGGAGGGAAAGAGCGAACACACCAAGAATTCATGGAATTGGCAATAGGATCTGGATTTAGTGGCATCAAAGTCGTGTGTTGTGTCGTTGGCTTCTGGGTCATGGAATTCTTCAAGTAG 1110 0.4333 MMATSSESNGVVNGEDKNNVKSEDDGVTLAMQWACSMVLPLTLQSAIELGIFNIIAKSGEGAKLSAKDIAVQIGTNNPEAPIMLDRLLRLLTSYSILHCSFSEDTQRSQLLYSLTPGSKYFVTDADGVSLGPFLTLNMDKDFSKCWIGLNGAIQEGGMPFNRVFGMHLFEYTKVDPRANEVFNIGMLSSATIIVKTVLERYTGFEQINTLVDVGGGLGFNLKLITSKYSHIQGVNFDLPHVIKHAPVYDGVEHIGGDMFESIPKGDAIFMKWILHDWSDEYCLKLLKNCYKAIPDDGKIIVVDTILPIVPGTTAIDKVASSFDVFMLTGCPGGKERTHQEFMELAIGSGFSGIKVVCCVVGFWVMEFFK* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03429 369 FunFam Caffeic acid O-methyltransferase 122 369 - -
Rops11g03429 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 369 IPR016461 GO:0008168
Rops11g03429 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 367 IPR029063 -
Rops11g03429 369 PANTHER O-METHYLTRANSFERASE 34 350 IPR016461 GO:0008168
Rops11g03429 369 Gene3D Vaccinia Virus protein VP39 122 369 IPR029063 -
Rops11g03429 369 FunFam Caffeic acid 3-O-methyltransferase 10 121 - -
Rops11g03429 369 Pfam Dimerisation domain 42 92 IPR012967 GO:0046983
Rops11g03429 369 Pfam O-methyltransferase domain 146 351 IPR001077 GO:0008171
Rops11g03429 369 Gene3D - 8 121 IPR036388 -
Rops11g03429 369 PIRSF O-mtase 11 369 IPR016461 GO:0008168
Rops11g03429 369 SUPERFAMILY "Winged helix" DNA-binding domain 23 124 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03429 Rops-Chr11 65811988 65814696 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03429 22 369 Monolignol Biosynthesis Gene Families AT5G54160 51.289 2.07e-129 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03429 K13066 - gmx:100789402 464.922