Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03423 ATGACTGGTCCTGGTTCTCCTTGTGGAGCCTGTAAATTCTTGCGAAGGAAGTGTGTGAGAGGTTGTGTTTTTGCACCTTATTTTTGTCATGATCAACTATATACCCATTTTCCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCCCATCTCCCTGTGAGTGATCGTTATGAAGCTGCACTTACTATCTCATATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCCCATATTTTTGCACTCCAACAACAGGTGGTCAATTTACAAGCACAGCTAGTTTATCTCAGGGAACAAGCAGCTCAGAGATGTTTTAATGCCTCAGCTGCTGAAAACCCTAATGAGAATATTATGGGTCCTCAATTTTTTTCACCAAACTTGATCACTAATCCCTCAACATTACAATATTATGGGAATATTACTCCCATGGACCCAAACCCTATTGGAAATTATGAAAATTCAGGAACCATGGAAGAGAGCATCTCATTTTCTAGATTTGAAGAGAGTTGTGACATGCAAAGACAGTGGTCCTTTCATGAAGTGTATAACCTTCAGTAA 582 0.4038 MTGPGSPCGACKFLRRKCVRGCVFAPYFCHDQLYTHFPAIHKVFGASNVSKLLAHLPVSDRYEAALTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLVYLREQAAQRCFNASAAENPNENIMGPQFFSPNLITNPSTLQYYGNITPMDPNPIGNYENSGTMEESISFSRFEESCDMQRQWSFHEVYNLQ* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03423 193 Coils Coil 87 107 - -
Rops11g03423 193 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Rops11g03423 193 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 122 - -
Rops11g03423 193 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03423 Rops-Chr11 65682728 65683413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03423 7 122 AS2 family AT3G58190 77.119 4.19e-63 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops11g03423 LOB 6.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03423 K13945 K13944 gmx:100816960 280.026