LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g03419	ATGGCTACTTCATCAGAATCTAATTTATTTGTTGTCAATGGTGAAGACAAGAATAATGGTAAATCAGAAGAAGGACACGTCCCAGAAGATGACGGCGTTACTTTAGCCATGCAATGGGCAAGTTCAATTGTGTTGCCCTTGACTTTGAAATCCGCAATTGAGCTGGGAATCTTCAACATCATTGCCAAATCAGGTGAAGGTGCCAAACTCTCTGCAAAGGACATTGCAATTCAAATTGGCACCAACAACCCAGAAGCTCCCATCATGCTGGATCGTCTTCTTAGGCTGTTGGCTAGTAACTCCATCCTTCACTGCTCTGTCTCTGAAGACACTGAAAGGCACCAGCTTCTGTACAGTCTCACCCCTGGGTCCAAATATTTTGTGACCGATGCTGATAATGCCTCACTTGGACCCTTCTTGACCTTTACTATGGAAAAGGTCTTTTGCCAATGCTGGATTGAATTAAAAGGAGCGATCCAAGAAGGTGGTACTCCATTCAACAGGGTTTATGGCATGGATCTTTTTCAATATACAAAGGTAGATTCCCGGGTTAATGAGGTCTTCAATAAAGGTATGCTCAGCTCAACCACTGTAGTTATGAAGGCAGTTCTTGAACGCTACAAAGGTTTTGAACACATAAATAAACTAGTGGATGTTGGTGGTGGTCTTGGGTTTAATCTCAAATTAATCACTTCCAAATACCCTCACATCCAAGGTGTTAATTTTGACTTGCCTCATGTCATTCAACATGGTCTCGTATTTGCTGGTGTAAAACATGTGGGAGGAGATATGTTTGAGAGTGTTCCTAAAGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAATACTGCTTGAAGCTCTTGAATAATTGCTACAAGGCTATTCCTAATTATGGAAAGGTGATTGTTGTGGACACAATTGTTCCAATTGTACCTGAGCCAACAACTATTAACAAGGTTGTCTCCTCATCTGATATTTTCATGTTGACTCAATGTCGAGGTGGGAAAGAGCGAACACAACAAGAATTCATGGAGTTGGCAACAAGATCAGGATTTAGTGGCATCAAAGTCATATGTTGTGTTGCTGGCTTCTGGGTTATGGAGTTTTTCAAGTAA	1128	0.4122	MATSSESNLFVVNGEDKNNGKSEEGHVPEDDGVTLAMQWASSIVLPLTLKSAIELGIFNIIAKSGEGAKLSAKDIAIQIGTNNPEAPIMLDRLLRLLASNSILHCSVSEDTERHQLLYSLTPGSKYFVTDADNASLGPFLTFTMEKVFCQCWIELKGAIQEGGTPFNRVYGMDLFQYTKVDSRVNEVFNKGMLSSTTVVMKAVLERYKGFEHINKLVDVGGGLGFNLKLITSKYPHIQGVNFDLPHVIQHGLVFAGVKHVGGDMFESVPKGDAIFMKWILHDWSDEYCLKLLNNCYKAIPNYGKVIVVDTIVPIVPEPTTINKVVSSSDIFMLTQCRGGKERTQQEFMELATRSGFSGIKVICCVAGFWVMEFFK*	376

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g03419	375	PIRSF	O-mtase	15	375	IPR016461	GO:0008168
	Rops11g03419	375	Pfam	Dimerisation domain	48	98	IPR012967	GO:0046983
	Rops11g03419	375	PANTHER	O-METHYLTRANSFERASE	37	358	IPR016461	GO:0008168
	Rops11g03419	375	MobiDBLite	consensus disorder prediction	1	15	-	-
	Rops11g03419	375	MobiDBLite	consensus disorder prediction	1	27	-	-
	Rops11g03419	375	Pfam	O-methyltransferase domain	152	357	IPR001077	GO:0008171
	Rops11g03419	375	Gene3D	-	13	127	IPR036388	-
	Rops11g03419	375	FunFam	Caffeic acid O-methyltransferase	128	375	-	-
	Rops11g03419	375	FunFam	Caffeic acid 3-O-methyltransferase	16	127	-	-
	Rops11g03419	375	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	133	373	IPR029063	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g03419	Rops-Chr11	65650423	65653439	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g03419	26	375	Monolignol Biosynthesis Gene Families	AT5G54160	50.000	6.27e-124	360

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g03419	K13066		-	gmx:100789402	456.832

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