Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03415 ATGGATGGCTTTAGACGTGGCCAAAGGGATCAATTATCTCCACTGTCTGAAGCCTCCAATCATGCATTGGGATCTCAAATCCCCAAACCTGTTAGTAGACAAAATTGGACTGTGAAGGTGTGTGATTTTGGATTGTCCAGATTTAAGGCGAACGCTTTCTTATCATCAAAATCTGTTGCTGGAACGATCCTTATGGCGACTTCATCAGAATCTAATGGAGTTGTCAGTGGAAAACACAATAATAATGTTAAATCAGATGAAGGACTCGTCCCACAAGAGGATGGCGTTAGTTTTGCCATGCAATGGGCAATTTCAATTGTGTTGCCTTTGTCTTTGCAATCCGCAATTGAACTGGGAATTTTCAACATCATTGCCAAATCAGGTGAAGGTGCCAAACTCTCTGCAAAGGACATTGCAGTTCAGATTGGTACCAACAACCCAGAAGCACCCATCATGCTGGATCGTCTTCTTAGGCTGTTGGCTAGTTACTCCATCTTACATTGCTCTGTCTCTGAAGATACTCAAAGGCCCCAGCTTCTGTACAGTCTCACCCCTGGGTCCAAATATTTTGTGACTGATGCTGATGGTGTCTCGCTTGGCCCCTTCTTGACCTTTGCAAATGACAAGGTCTTCTGCCAAAGCTGGATTGAACTAAAAGGAGCGATCCAAGAAGGTGGTACACCATTCAACAGGGTTTATGGTATGCATCCCTTTGATTATGCAAGGGTAGATCCGAGGGTTAATGAGGTTTTCAACAAAGGGATGACAAGCTCTACCACCATAATTATGAAGGCAATTCTTGAACTCTACAAAGGTTTTGAACACATAAATAGACTAGTGGATGTTGGCGGTGGTCTTGGCATTAATCTTAAATTGATCACTTCCAAATATCCTCACATCCAGGGTGTTAATTTTGACTTGCCTCATGTCATTGAACATGCTCCCGTCTATGATGGGGTGGAGCATGTGGGAGGAGATATGTTTGAGAGTGTTCCTAACGGAGATGCCATTTTCATGAAGTGGGTACTTCATGATTGGAGTGATGAATACTGCCTGAAGCTCTTGAAGAATTGCTACAATGCTATTCCTGATGATGGAAAGGTTATTGTTGTGGACATAATTCTTCCTATTGTGCCTGAGACAACTTTTAACGACAAGGTTGCTTCCACATTTGATCTCTCCTTGTTAACTCTATTCCAAGGTGGGAAAGAGCGAACACAACAAGAATTCATGAAATTGGCAACAAGATCTGGATTTAGTGGCATCAAAGTTGTATGTTGTGTTGCTGGCTTCTGGGTTATGGAATTCTTCAAGTAG 1317 0.4252 MDGFRRGQRDQLSPLSEASNHALGSQIPKPVSRQNWTVKVCDFGLSRFKANAFLSSKSVAGTILMATSSESNGVVSGKHNNNVKSDEGLVPQEDGVSFAMQWAISIVLPLSLQSAIELGIFNIIAKSGEGAKLSAKDIAVQIGTNNPEAPIMLDRLLRLLASYSILHCSVSEDTQRPQLLYSLTPGSKYFVTDADGVSLGPFLTFANDKVFCQSWIELKGAIQEGGTPFNRVYGMHPFDYARVDPRVNEVFNKGMTSSTTIIMKAILELYKGFEHINRLVDVGGGLGINLKLITSKYPHIQGVNFDLPHVIEHAPVYDGVEHVGGDMFESVPNGDAIFMKWVLHDWSDEYCLKLLKNCYNAIPDDGKVIVVDIILPIVPETTFNDKVASTFDLSLLTLFQGGKERTQQEFMKLATRSGFSGIKVVCCVAGFWVMEFFK* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03415 438 Gene3D - 75 190 IPR036388 -
Rops11g03415 438 PANTHER O-METHYLTRANSFERASE 100 421 IPR016461 GO:0008168
Rops11g03415 438 FunFam Caffeic acid 3-O-methyltransferase 78 190 - -
Rops11g03415 438 CDD AdoMet_MTases 278 375 - -
Rops11g03415 438 FunFam Caffeic acid O-methyltransferase 191 438 - -
Rops11g03415 438 Pfam O-methyltransferase domain 215 420 IPR001077 GO:0008171
Rops11g03415 438 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 195 436 IPR029063 -
Rops11g03415 438 MobiDBLite consensus disorder prediction 1 26 - -
Rops11g03415 438 Pfam Dimerisation domain 111 161 IPR012967 GO:0046983
Rops11g03415 438 Gene3D Vaccinia Virus protein VP39 191 438 IPR029063 -
Rops11g03415 438 SUPERFAMILY "Winged helix" DNA-binding domain 93 193 IPR036390 -
Rops11g03415 438 MobiDBLite consensus disorder prediction 12 26 - -
Rops11g03415 438 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 100 438 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03415 Rops-Chr11 65521752 65528016 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03415 90 438 Monolignol Biosynthesis Gene Families AT5G54160 52.857 2.81e-132 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03415 K13066 - gmx:100789402 484.952