Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03412 ATGGCTACTTCATCCGAATCTAATTTATTTGTTGTCAATGGTGAAGACAAGAATAATGTTAAATCAGAAGAAGGACACGTCCCAGAAGATGACGGCGTTACTTTAGCCATGCAATGGGCAAGTTCAATTGTGTTGCCCTTGACTTTGAAATCCGCAATTGAACTGGGAATCTTCAACATCATTGCCAAATCAGGTGAAGGTGCCAAACTCTCTGCAAAGGACATTGCAATTCAAATTGGCACCAACAACCCAGAAGCTCCCATCATGCTTGATCGTCTTCTTAGGCTGTTGGCTAGTAACTCCATCCTTCACTGCTCTGTCTCTGAAGACACTGAAAGGCACCAGCTTCTGTACAGTCTCACCCCTGGGTCCAAATATTTTGTGACCGATGCTGATAATGCCTCACTTGGACCCTTCTTGACCTTTACTATGGAAAAGGTCTTTTGCCAATGCTGGATTGAATTAAAAGGAGCGATCCAAGAAGGTGGTACTCCATTCAACAGGGTTTATGGCATGGATCTTTTTCAATATACAAAGGTAGATTCCCGGGTTAATGAGGTCTTCAATAAAGGTATGCTCAGCTCAACCACTGTAGTTATGAAGGCAGTTCTTGAACGCTACAAAGGTTTTGAACACATAAATAAACTAGTGGATGTTGGTGGTGGTCTTGGGTTTAATCTCAAATTAATCACTTCCAAATACCCTCACATCCAAGGTGTTAATTTTGACTTGCCTCATGTCATTCAACATGGTCTCGTATTTGCTGGTGTAAAACATGTGGGAGGAGATATGTTTGAGAGTGTTCCTAAAGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAATACTGCTTGAAGCTCTTGAATAATTGCTACAAGGCTATTCCTAATTATGGAAAGGTGATTGTTGTGGACACAATTGTTCCAATTGTACCTGAGCCAACAACTATTAACAAGGTTGTCTCCTCATCTGATATTTTCATGTTGACTCAATGTCGAGGTGGGAAAGAGCGAACACAACAAGAATTCATGGAGTTGGCAACAAGATCAGGATTTAGTGGCATCAAAGTCATATGTTGTGTTGCTGGCTTCTGGGTTATGGAGTTTTTCAAGTAA 1128 0.4105 MATSSESNLFVVNGEDKNNVKSEEGHVPEDDGVTLAMQWASSIVLPLTLKSAIELGIFNIIAKSGEGAKLSAKDIAIQIGTNNPEAPIMLDRLLRLLASNSILHCSVSEDTERHQLLYSLTPGSKYFVTDADNASLGPFLTFTMEKVFCQCWIELKGAIQEGGTPFNRVYGMDLFQYTKVDSRVNEVFNKGMLSSTTVVMKAVLERYKGFEHINKLVDVGGGLGFNLKLITSKYPHIQGVNFDLPHVIQHGLVFAGVKHVGGDMFESVPKGDAIFMKWILHDWSDEYCLKLLNNCYKAIPNYGKVIVVDTIVPIVPEPTTINKVVSSSDIFMLTQCRGGKERTQQEFMELATRSGFSGIKVICCVAGFWVMEFFK* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03412 375 Pfam Dimerisation domain 48 98 IPR012967 GO:0046983
Rops11g03412 375 Pfam O-methyltransferase domain 152 357 IPR001077 GO:0008171
Rops11g03412 375 PIRSF O-mtase 14 375 IPR016461 GO:0008168
Rops11g03412 375 Gene3D - 13 127 IPR036388 -
Rops11g03412 375 FunFam Caffeic acid O-methyltransferase 128 375 - -
Rops11g03412 375 PANTHER O-METHYLTRANSFERASE 37 358 IPR016461 GO:0008168
Rops11g03412 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 133 373 IPR029063 -
Rops11g03412 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 37 375 IPR016461 GO:0008168
Rops11g03412 375 SUPERFAMILY "Winged helix" DNA-binding domain 31 130 IPR036390 -
Rops11g03412 375 Gene3D Vaccinia Virus protein VP39 128 375 IPR029063 -
Rops11g03412 375 FunFam Caffeic acid 3-O-methyltransferase 15 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03412 Rops-Chr11 65490935 65493713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03412 26 375 Monolignol Biosynthesis Gene Families AT5G54160 50.000 5.44e-124 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03412 K13066 - gmx:100789402 456.832