Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03409 ATGCAATGGGCAAGTTCAATTGCGTTGCCCTTGACTTTGAAATCCGCAATTGAACTGGGAATCTTCAACATTATTGCCAAATCAGGTGAAGGTGCCAAACTCTCTGCAAAGGACATTGCAATTCAAATTGGCACCAACAACCCAGAAGCTCCCATCATGCTGGATCGTCTTCTTAGGCTGTTGGCTAGTTACTCCATCCTTCACCGCTTCTATCCTCAAGATACCGAAAGGCACCAGCTTCTCTACAGTCTGACCGCTGGGTCCAAATATTTTGTGACCGATGCTGATGATGTCTCACTTGGCCCTTTCTTGACCTTAGTAATGGACAAGGTCCTCTACCCATGCTGTTGCAATAGAGAAGCACATCTTCAGCACTTAGGAGATTTTCCAAACACTAAGGCAGAATCAGTGCTCTTAGATAACGCTCAAAGCAAGTCAATATATGAGAGGGAATTAATGGCTCTTGTAATGGCAGTCCAAAAGTGGAGACACTATCTCCTTGGAAATAAATTCATCATCAAAACAGACCAAGGATTCAATTTTGAAATTCAACACAAGCCTGGCAAACAAAACACAGTAGCTGATGCTAAACTCAAAGATATCTTTCAGAGGGTGTTGACAGAGCCACATTCACTGCCAAATTACAAGTATTGGTTTAATACCAATTATAATGCCTCCACCAAAACATCTCCTTTTAAGATTCTATATGGGAAGGATCCCCCAACACTTTTGAGAGGCATTACTATTCCCTCGAATGTGCCAGAGATTAACCAACTGACTTTTGACAAAGATCTCTTAGATGAACTTAAAAACAATTTAAATGTTGCCCAACAGAAGATGAAGATGTTTGCAGATAAAAAGAGGAGAGATGTAGTTTTTGAAGTGGGTGATTCAGTATTCTTTCCACGATTTTATGGTCTTTCCACCATCACTGACAGAATTGGAGAAGTGGCATACCGCCTGCAATTACCAGATCATGCTTGGATTCACCTTGTTTTTCACGTATCCAGATTGAAGAAAGTTGTTCCAGATTAA 1035 0.4097 MQWASSIALPLTLKSAIELGIFNIIAKSGEGAKLSAKDIAIQIGTNNPEAPIMLDRLLRLLASYSILHRFYPQDTERHQLLYSLTAGSKYFVTDADDVSLGPFLTLVMDKVLYPCCCNREAHLQHLGDFPNTKAESVLLDNAQSKSIYERELMALVMAVQKWRHYLLGNKFIIKTDQGFNFEIQHKPGKQNTVADAKLKDIFQRVLTEPHSLPNYKYWFNTNYNASTKTSPFKILYGKDPPTLLRGITIPSNVPEINQLTFDKDLLDELKNNLNVAQQKMKMFADKKRRDVVFEVGDSVFFPRFYGLSTITDRIGEVAYRLQLPDHAWIHLVFHVSRLKKVVPD* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03409 344 PANTHER O-METHYLTRANSFERASE 4 162 IPR016461 GO:0008168
Rops11g03409 344 Coils Coil 259 286 - -
Rops11g03409 344 SUPERFAMILY "Winged helix" DNA-binding domain 1 94 IPR036390 -
Rops11g03409 344 Pfam Dimerisation domain 12 62 IPR012967 GO:0046983
Rops11g03409 344 Gene3D - 6 125 IPR036388 -
Rops11g03409 344 Pfam RNase H-like domain found in reverse transcriptase 139 177 IPR041373 -
Rops11g03409 344 FunFam Caffeic acid 3-O-methyltransferase 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03409 Rops-Chr11 65444796 65447800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03409 1 112 Monolignol Biosynthesis Gene Families AT5G54160 43.103 4.69e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03409 - K02209 var:108328253 143.28