Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03408 ATGCTGGATCGTCTTCTTAGGCTGTTGGCTAGTTACTCCATCCTTCACTGCTCTATCCCTGAAGATACTGAAAGGCACCAGCTTCTCTACAGTCTGACCGCTGGGTCCAAATATTTTGTGACCGATGCTGATGATGTCTCACTTGGCCCTTTCTTGACCTTAGTAATGGACAAGGTCCTCTACCCATGCTGGACGCCATTCAATAAGGTTTATGGCATGCATTTCTTTGAGTATACCAAGGTGGATCTTAGGTTTAATGAGGATTTTAACAAAGGTATGCTTAGTTCCACCACTGTAGTTATGAAGACGATTCTTGAGCTCTACAAAGGTTTTGAACACATAAATAGACTAGTAGATGTTGGTGGTGGTCTTGGAGTGAATCTCAAATTGATCAATATCAAATACCCTCACATCCATGGTGTTAATTTTGACTTGGCTCATGTCATTGAACATGCTCCCGTTTATACTGGTGTGGAACATGTAGGAGGAGACATGTTTGAGAGCATTCCTAAAGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAATACTGCTTGAAGTTGTTAAAGAATTGCTACAAGGCTATTCCTGATGATGGAAAGGTTATTGTTGTGGACACAATCGTTCCCATTGTTCCTCAGACAATGGCCAATGACAAGGTTGCTTCCTCATTCGATCTCTTCATGTTGACTCTAAGCCCAGGAGGGAAAGAGCGAACACAGCAAGAATTCATGAAATTGGCTACAAAATCTGGATTTAGTAGCATCAAAGTCGTAAGTTGTGTTGCTGGCTTTTGGATTATGGAGTTCTTCAAGTAG 831 0.4152 MLDRLLRLLASYSILHCSIPEDTERHQLLYSLTAGSKYFVTDADDVSLGPFLTLVMDKVLYPCWTPFNKVYGMHFFEYTKVDLRFNEDFNKGMLSSTTVVMKTILELYKGFEHINRLVDVGGGLGVNLKLINIKYPHIHGVNFDLAHVIEHAPVYTGVEHVGGDMFESIPKGDAIFMKWILHDWSDEYCLKLLKNCYKAIPDDGKVIVVDTIVPIVPQTMANDKVASSFDLFMLTLSPGGKERTQQEFMKLATKSGFSSIKVVSCVAGFWIMEFFK* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03408 276 Gene3D - 1 104 IPR036388 -
Rops11g03408 276 Gene3D Vaccinia Virus protein VP39 86 265 IPR029063 -
Rops11g03408 276 PANTHER O-METHYLTRANSFERASE 1 257 IPR016461 GO:0008168
Rops11g03408 276 Pfam O-methyltransferase domain 66 258 IPR001077 GO:0008171
Rops11g03408 276 SUPERFAMILY "Winged helix" DNA-binding domain 1 42 IPR036390 -
Rops11g03408 276 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 276 IPR016461 GO:0008168
Rops11g03408 276 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 274 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03408 Rops-Chr11 65428797 65432528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03408 1 276 Monolignol Biosynthesis Gene Families AT5G54160 51.389 2.00e-100 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03408 K13066 - gmx:100789402 353.599