Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03407 ATGGCGACTTCATCAGAATCTAATGTTCAACTAGAACTTGTCAGTGATGAAAACAAGAATAATGTTAAATCAGATGAAGGACACGTCCCACAAGAGAATGGCGTTACTTTAGCCATGCAATGGGCAAGCTCAATTGTGTTGCCCTTGACTTTGAAATCCGCAATTGAACTCTCTGCAAAGGACATTGCAATTCAAATTGGCACCAACAACCCAGAAGCTCCCATCATGCTGGATCGTCTTCTTAGGCTGTTGGCTAGTTACTCCATCCTTCACTGCTCTGTCCCTGAAGATACTGAAAGGCATCAGCTTCTGTACAGTCTCACTCCTGGGTCCAAATATTTTGTGACCGATGCTGATAATGTCTCACTTGGACCCTTCTTGACCTTAATTATGGAAAAGGTCTTTTGCCAAAGCTGGACTGAAGTAAAAGGAGCGATCCTTGAAGGTGGTACCCCATTCAACAAGTTTTATGGCATGGATATCTTTGAGTACACAAAGGTAGATTCCAAGGTTAATGAGGTTTTCAATAAAGGTATGCTTAGTTCAACCACTGTAGTTATGAAGACAGTTCTTGAACGCTACAAAGGTTTTGAACACATAAATAAACTAGTGGATGTTGGTGGTGGTCTTGGGTTTAATCTCAAATTAATCACTTCCAAATACCCTCACATCCAAGGTGTTAATTTTGACTTGCCTCATGTCATTCAACATGGTCTCGTCTATGCTGGTGTAAAACATGTGGGAGGAGATATGTTTGAGAGTGTTCCTAAAGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAATACTGCTTGAAGCTCTTGGATAATTGCTACAAGGCTATTCCTAATGATGGAAAGGTGATTGTTGTAGACACAATTGTTCCAATTGGACCTGAGACAACAACTATTAACAAGGTTGTCTCCTCATTTGATCTTTTCATGTTGACTCAATGTCGAGGTGGGAAAGAGCGAACACAACAAGAATTCATGGAATTGGCAACAAGATCTCGATTTAGTGACATCAAAATCGTATGTTATGTCGCTGGCTTTTGGGTTATGGAGTTCATCAAGTAA 1089 0.404 MATSSESNVQLELVSDENKNNVKSDEGHVPQENGVTLAMQWASSIVLPLTLKSAIELSAKDIAIQIGTNNPEAPIMLDRLLRLLASYSILHCSVPEDTERHQLLYSLTPGSKYFVTDADNVSLGPFLTLIMEKVFCQSWTEVKGAILEGGTPFNKFYGMDIFEYTKVDSKVNEVFNKGMLSSTTVVMKTVLERYKGFEHINKLVDVGGGLGFNLKLITSKYPHIQGVNFDLPHVIQHGLVYAGVKHVGGDMFESVPKGDAIFMKWILHDWSDEYCLKLLDNCYKAIPNDGKVIVVDTIVPIGPETTTINKVVSSFDLFMLTQCRGGKERTQQEFMELATRSRFSDIKIVCYVAGFWVMEFIK* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03407 362 Gene3D Vaccinia Virus protein VP39 115 362 IPR029063 -
Rops11g03407 362 PANTHER O-METHYLTRANSFERASE 39 343 IPR016461 GO:0008168
Rops11g03407 362 Gene3D - 14 114 IPR036388 -
Rops11g03407 362 FunFam Caffeic acid 3-O-methyltransferase 16 114 - -
Rops11g03407 362 Pfam Dimerisation domain 57 85 IPR012967 GO:0046983
Rops11g03407 362 SUPERFAMILY "Winged helix" DNA-binding domain 33 117 IPR036390 -
Rops11g03407 362 FunFam Caffeic acid O-methyltransferase 115 362 - -
Rops11g03407 362 Pfam O-methyltransferase domain 139 343 IPR001077 GO:0008171
Rops11g03407 362 PIRSF O-mtase 12 362 IPR016461 GO:0008168
Rops11g03407 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 360 IPR029063 -
Rops11g03407 362 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 27 362 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03407 Rops-Chr11 65425426 65427723 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03407 28 362 Monolignol Biosynthesis Gene Families AT5G54160 49.716 9.69e-121 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03407 K13066 - gmx:100789402 427.557