Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03401 ATGGCGACTTCATCAGAATCTAATGTTCAACTAGAACTTGTCAGTGATGAAAACAAGAATAATGTGAAATCAGATGAAGGACACGTCCCACAAGAGGATGGCGTTACTTTAGCCATGCAATGGGCAAGCTCAATTGCGTTGCCCGTGACTTTGCAGGCCGCAATTGAGCTGGGAATCTTCAACATCATTGCCAAATCAGGTGAAGGTGCCAAACTCTCTGCAAAGGACATTGCAGTTCAAATTGGCACCAACAACCCAGAAGCTCCCATCATGCTGGATCGTCTTCTTAGGCTGTTGGCTAGTTACTCCATCCTTCACTCCTCTCTCCCTGAAGATACTGAAAGGCACCAGCTTCTCTACAGTCTGACCCCTGGGTCCAAATATTTTGTGACCGATGCGGATGATGTCTCACTTGGCCCCTTCTTGACCTTATTAATGGACAAGGTCCTCTACCCATGCTGGTTTGAACCAAAAGGAGCGATCCAAGGCAGGACGCCATTCAATAAGGTTTATGGCATGCATTTCTTTGAGTATACCAAGGTGGATCTTAGGTTTAATGAGGATTTTAACAAAGGTATGCTTAGTTCCACCACTGTAGTTATGAAGACGATTCTTGAACTCTACAAAGGTTTTCAACACATAAATAGACTAGTAGATGTTGGTGGTGGTCTTGGAGTGAATCTCAAATTGATCAATATCAAATACCCTCACATCCATGGTGTTAATTTTGACTTGCCTCATGTCATTGAACATGCTCCCGTTTATACTGGTGTGGAACATGTAGGAGGAGACATGTTTGAGAGCATTCCTAAAGGAGATGCCATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAATACTGCTTGAAGTTGTTAAAGAATTGCTACAAGGCTATTCCTGATGGTGGAAAGGTTATTGTTGTGGACGCAATCATTCCCATTGTTCCTCAGACAATGGCCAATGACAAGGTTGCTTCCTCATTCGATCTCTTCATGTTGACTCTAAGCCCAGGAGGGAAAGAGCGAACACAGCAAAAATTCATGAAATTGGCTACAAAATCTGGATTTAGTAGCATCAAAGTCGTATGTTGTGTTGCTGGCTTTTGGATTATGGAGTTCTTCAAGTAG 1131 0.4279 MATSSESNVQLELVSDENKNNVKSDEGHVPQEDGVTLAMQWASSIALPVTLQAAIELGIFNIIAKSGEGAKLSAKDIAVQIGTNNPEAPIMLDRLLRLLASYSILHSSLPEDTERHQLLYSLTPGSKYFVTDADDVSLGPFLTLLMDKVLYPCWFEPKGAIQGRTPFNKVYGMHFFEYTKVDLRFNEDFNKGMLSSTTVVMKTILELYKGFQHINRLVDVGGGLGVNLKLINIKYPHIHGVNFDLPHVIEHAPVYTGVEHVGGDMFESIPKGDAIFMKWILHDWSDEYCLKLLKNCYKAIPDGGKVIVVDAIIPIVPQTMANDKVASSFDLFMLTLSPGGKERTQQKFMKLATKSGFSSIKVVCCVAGFWIMEFFK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03401 376 FunFam Caffeic acid 3-O-methyltransferase 16 129 - -
Rops11g03401 376 Gene3D Vaccinia Virus protein VP39 130 376 IPR029063 -
Rops11g03401 376 PIRSF O-mtase 15 376 IPR016461 GO:0008168
Rops11g03401 376 PANTHER O-METHYLTRANSFERASE 38 357 IPR016461 GO:0008168
Rops11g03401 376 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 39 376 IPR016461 GO:0008168
Rops11g03401 376 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 374 IPR029063 -
Rops11g03401 376 FunFam Caffeic acid O-methyltransferase 130 376 - -
Rops11g03401 376 Gene3D - 14 129 IPR036388 -
Rops11g03401 376 SUPERFAMILY "Winged helix" DNA-binding domain 32 132 IPR036390 -
Rops11g03401 376 Pfam Dimerisation domain 50 100 IPR012967 GO:0046983
Rops11g03401 376 Pfam O-methyltransferase domain 164 358 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03401 Rops-Chr11 65330644 65332576 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03401 28 376 Monolignol Biosynthesis Gene Families AT5G54160 50.847 1.94e-121 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03401 K13066 - aprc:113848912 444.506