Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03397 ATGGCGACTTCATCAGAATCTAATGTTCAACTAGAACTTGTCAGTGATGAAAACAAGAATAATGTTAAATCAGAAGAAGGACACGTCCCACAAGAGGATGGCGTTACTTTAGCCATGCAATGGGCAAGCTCAATTTCGTTGCCCGTGACTTTGCGGGCCGCAATTGAGCTGGGAATCTTCAACATCATTGCCAAATCAGGTGAAGGTGCCAAACTCTCTGCAAAGGACATTGCAGTTCAAATTGGCACCAACAACCCAGAAGCTCCCATCATGCTGGATCGTCTTCTTAGGCTGTTGGCTAGTTACTCCATCCTTCACTCCTCTCTCCCTGAAGATACTGAAAGGCACCAGCTTCTCTACAGTCTGACCCCTGGGTCCAAATATTTTGTGACCGATGCGGATGATGTCTCACTTGGCCCTTTCTTGACCTTAATAATGGACAAGGTCCTCTACTCATGCTGGTTTGAACTAAAAGGAGCGATCCAAGACGGCAGGACGCCATTCAATAAGGTTTATGGCATGCATTTCTTTGAGAATACCAAGGTGGATCTTAGGTTTAATGAGGATTTCAACAAAGGTATGCTTAGTTCCACCACTGTAGTTATGAAGACGATTCTTGAACTCTACAAAGGTTTTGAACACATAAATAGACTAGTAGATGTTGGTGGTGGTCTTGGGGTGAATCTCAAATTGATCAATATCAAATACCCTCACATCCATGGTGTTAATTTTGACTTGCCTCAGGTCATTGAACATGCTCCCGTTTATACTGGTGTGGAACATGTAGGAGGAGACATGTTTGAGAGCATTCCTAAAGGAGATGCCATTTTTATGAAGTGGATACTTCATAATTGGAGTGATGAATACTGCTTGAAGTTGTTAAAGAATTGCTACAACGCTATTCCTGATGATGGAAAGGTTATTGTTGTGGACACAATCGTTCCCATTGTTCCTCAGACAATGGCCAATGACAAGGTTGCTTCCTCATTCGATCTCTTCATGTTGACTCTATTCCAAGGAGGGAAAGAGCGAACACAGCAAGAATTCATGAAATTGGCTACAAAATCTGGATTTAGTAGCATCAAAGTCGTATGTTGTGTTGCTGGCTTTTGGATTATGGAGTTCTTCAAGTAG 1134 0.425 MATSSESNVQLELVSDENKNNVKSEEGHVPQEDGVTLAMQWASSISLPVTLRAAIELGIFNIIAKSGEGAKLSAKDIAVQIGTNNPEAPIMLDRLLRLLASYSILHSSLPEDTERHQLLYSLTPGSKYFVTDADDVSLGPFLTLIMDKVLYSCWFELKGAIQDGRTPFNKVYGMHFFENTKVDLRFNEDFNKGMLSSTTVVMKTILELYKGFEHINRLVDVGGGLGVNLKLINIKYPHIHGVNFDLPQVIEHAPVYTGVEHVGGDMFESIPKGDAIFMKWILHNWSDEYCLKLLKNCYNAIPDDGKVIVVDTIVPIVPQTMANDKVASSFDLFMLTLFQGGKERTQQEFMKLATKSGFSSIKVVCCVAGFWIMEFFK* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03397 377 MobiDBLite consensus disorder prediction 1 17 - -
Rops11g03397 377 FunFam Caffeic acid 3-O-methyltransferase 15 129 - -
Rops11g03397 377 MobiDBLite consensus disorder prediction 1 29 - -
Rops11g03397 377 FunFam Caffeic acid O-methyltransferase 130 377 - -
Rops11g03397 377 Gene3D Vaccinia Virus protein VP39 130 377 IPR029063 -
Rops11g03397 377 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 375 IPR029063 -
Rops11g03397 377 Pfam Dimerisation domain 50 100 IPR012967 GO:0046983
Rops11g03397 377 SUPERFAMILY "Winged helix" DNA-binding domain 32 132 IPR036390 -
Rops11g03397 377 Gene3D - 14 129 IPR036388 -
Rops11g03397 377 Pfam O-methyltransferase domain 154 359 IPR001077 GO:0008171
Rops11g03397 377 PIRSF O-mtase 15 377 IPR016461 GO:0008168
Rops11g03397 377 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 39 377 IPR016461 GO:0008168
Rops11g03397 377 PANTHER O-METHYLTRANSFERASE 38 358 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03397 Rops-Chr11 65245955 65248146 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03397 28 377 Monolignol Biosynthesis Gene Families AT5G54160 51.130 1.57e-122 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03397 K13066 - aprc:113848912 454.521