Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03395 ATGATGGCGACTTCATCAGAATCTAACGGAGTTGTCAGTGGTGAAGACAACAATAATGTTAAATCAGAAGAAGGACACGTCCCACAAGAGGATGGCGTTACTTTAGCCATGCAATGGGCAACTTCAATTGCGTTGCCCATGGCTTTGCAGGCCGCAACTGAGTTGGGAATCTTCAACATCATTGCCAAATATGGTGAAGATGCCAAACTCTCTGCAAAGGACATTGCAGTTCAGATTGGTACCAACAACCCAGAAGCACCCATCATGCTGGATCGTCTTCTTAGACTCTTGGCTAGTTACTCCATCTTACATTGCTCTGTCTCTGAAGATACTCAAAGGCCCCAGCTTCAGTACAGTCTCACCCCTGGGTCCAAATATTTTGTAACCGATGCTGATAATGTCTCACTTGGCCCCTTCTTGACCTTAGCAATGGACTAG 438 0.4589 MMATSSESNGVVSGEDNNNVKSEEGHVPQEDGVTLAMQWATSIALPMALQAATELGIFNIIAKYGEDAKLSAKDIAVQIGTNNPEAPIMLDRLLRLLASYSILHCSVSEDTQRPQLQYSLTPGSKYFVTDADNVSLGPFLTLAMD* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03395 145 FunFam Caffeic acid 3-O-methyltransferase 15 127 - -
Rops11g03395 145 SUPERFAMILY "Winged helix" DNA-binding domain 30 130 IPR036390 -
Rops11g03395 145 Gene3D - 12 127 IPR036388 -
Rops11g03395 145 PANTHER O-METHYLTRANSFERASE 37 141 IPR016461 GO:0008168
Rops11g03395 145 MobiDBLite consensus disorder prediction 1 27 - -
Rops11g03395 145 Pfam Dimerisation domain 47 98 IPR012967 GO:0046983
Rops11g03395 145 MobiDBLite consensus disorder prediction 1 18 - -
Rops11g03395 145 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 37 145 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03395 Rops-Chr11 65217589 65218026 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03395 26 145 Monolignol Biosynthesis Gene Families AT5G54160 41.463 2.85e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03395 K13066 - aprc:113848912 152.91