Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03381 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGGCCATTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCTACAACTAATAGAGAAATTGATGGGCACATACCTAATTACCCGAGTTTGCCACCCCAGTTGATTTGCCAACTTCACAATGTCACAATGCATGCTGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTTCAGCCACTGACTCCGCAAGAGCAAAAGGATACATTTCTTCCTATGGAATTGGGCATTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACTTTAACAGCCAGTGACACCAGCACACATGGAGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCATTGGATTTCTCCCAGCAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGACGTTGAATGGAAGTTTAGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGAGCCAACAGACCACAAACTGTAATGCCATCGTCAGTTCTATCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCGGCAACTAATAGCTGTTTTACTGTGTTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATATCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGATCTGGATGCTGTTCGGTGGCCGAATTCTCATTGGCGCTCAGTCAAGGTTGGTTGGGATGAATCGACAGCAGGAGAGAGGCAGCCACGAGTGTCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCATTATTTCCCCTCAGATTGAAACGGCCATGGTATCCTGGCTCCTCATCTTTTCATGATGGCAGAGATGAAGCAACTAATGGGCTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGTGCCGGTATGTTACCCTGGATGCAGCAGAGACTGGATCCAGCTTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGAACCTAGGTGGTGGATATCTCATGAGGCCACAAATGATGAATTTTCAACAGCCTTTCAATTACCCTCAACAGTCTGGAAACAATATATCTCCTTTGCAACTTCAGCAGCAGCAAGCAATTCAACAATCAACATCATCTAATATGCTGCAGCCACAAGCCCAAGTACTGACAGAGAACCTGTCTCAGCACCTCCTTCAGAAACCACACAACAATCAAGAAGTCCAAGCACAACAGCAGCAACATACTTACCAAGATAGGCTTTTAATTCAAAGTGATCAGCTCCATCAGAGACAACACTCCAGTGTGCCTTCACCATCGTATTCCAAACCAGATTTCTTAGATTCAAACATGAAGTTCGCTGCCTCAGTTTCCCCCAGACAAAGCATGCTTAGTTCACTTTGTCCTGAAGGAAGTGGCAGTCTCTTGAATTTATCCAGAAGTGGTCAGTCCTTGCTGACTGAACAGTTACCCCAACAACAATGGACACCAAAGTATGCACCTGTGCAGGTCAATGCCTTCAGCAGCACAATGTCACATGCACAATATTCTGGAAAAGATTCTGTAATGGTGTCACCAAATTGTAATTCTGATGCCCAAAATCCTACTCTATTTGGAGTCAATATCGATCCATCTGGCCTTCTACTCCCCACCACTGTTCCTGGTTACACTACGTCATCAGCTGATACTGATGTATCAACAATGCCTTTAGGGGAGTCTGGATTCCAGGGTTCTCTATATGCTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCAAGTTGACCCGCAAAACCAGACTCAAACATTTGTCAAGGTTTACAAATCAGGGTCTGTTGGGCGCTCGCTCGACATCTCGCGGTTCAGCAGCTATCATGAACTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGAAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAGATGGAAGAACAAGCGGTAGAACCCCTTGCTCTAGGTTCAGGACAAAGGCTTGGCACTGGTGTGGATTCTCACCACATTGTTTCTGGACCACCATCCATTGGCTCACTTGAATACTGA 2529 0.4508 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWYPGSSSFHDGRDEATNGLMWLRGGPVDQGLNSLNFQGAGMLPWMQQRLDPALLGNDQNQQYQAMLAAGLQNLGGGYLMRPQMMNFQQPFNYPQQSGNNISPLQLQQQQAIQQSTSSNMLQPQAQVLTENLSQHLLQKPHNNQEVQAQQQQHTYQDRLLIQSDQLHQRQHSSVPSPSYSKPDFLDSNMKFAASVSPRQSMLSSLCPEGSGSLLNLSRSGQSLLTEQLPQQQWTPKYAPVQVNAFSSTMSHAQYSGKDSVMVSPNCNSDAQNPTLFGVNIDPSGLLLPTTVPGYTTSSADTDVSTMPLGESGFQGSLYACMQDSSELLQSAGQVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMEEQAVEPLALGSGQRLGTGVDSHHIVSGPPSIGSLEY* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03381 842 FunFam Auxin response factor 126 230 - -
Rops11g03381 842 FunFam Auxin response factor 292 364 - -
Rops11g03381 842 SMART B3_2 128 230 IPR003340 GO:0003677
Rops11g03381 842 Gene3D - 126 229 IPR015300 -
Rops11g03381 842 MobiDBLite consensus disorder prediction 465 494 - -
Rops11g03381 842 ProSiteProfiles PB1 domain profile. 717 801 IPR000270 GO:0005515
Rops11g03381 842 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops11g03381 842 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Rops11g03381 842 Gene3D - 713 806 - -
Rops11g03381 842 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 806 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops11g03381 842 CDD B3_DNA 127 228 IPR003340 GO:0003677
Rops11g03381 842 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Rops11g03381 842 SUPERFAMILY CAD & PB1 domains 713 791 - -
Rops11g03381 842 Gene3D - 292 364 - -
Rops11g03381 842 FunFam Auxin response factor 712 806 - -
Rops11g03381 842 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Rops11g03381 842 Pfam AUX/IAA family 712 801 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03381 Rops-Chr11 64934115 64942489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03381 98 809 B3 DNA Binding Superfamily AT5G37020 68.698 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops11g03381 AUX_IAA 6.9e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03381 - - gmx:100784373 1565.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03381 11 64934115 64942489 Rops11g03381 11 64934115 64942489 ECH
Rops11g03381 11 64934115 64942489 Rops9g01097 9 17989156 17998393 PCT