Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03373 ATGGAGAAGAAGGTCCCGACAGTTACACCGCCGGACGATCTCCGATGCCAGCGGAACGACGGCAAATCATGGCGGTGCCGTCACTGGAGAATTCACGAGCAAAACTACTGCGAAGAGCATTACTTATACTACCAGGCAAAGTCCCTTCACCTTAACAACTTCAAATCAACGAAATCCAAGCTTTCTTCTGCTTCCGCTTCGGCGCCATTGGATTATGAAGAAGAGGACGATCGATCTGTTCGACGGAATCGCAGCTTCAAGCACCAATCGAACCATAAGAAGAACAAGAAGAAGCTTCTAGAAGATGAAAAGACAATACCGGAGAAGAAGAAGAAGAATAATAATAATAAGTGTAAGAGAATTCTAGAAGATGAAGAGGTCATTCCGGAGAAGAAGAACAGGAATAATCTTCCAGAATATGAAGAGACTGTTCTGGAGAAGAAGAAGCGGAAGAGGCTTCTAGAAGATGAAGAGATTGTTCAGGAGAAAAAGAAGAAGAAACTGAAGAGGCTTTTAGAAGAGGAAGAGATTGTTCCAGAGGAGAAAAACAAGAAGAAGATGAAATTGAAAGTGGAACGAGAATCTCAGAAGGAGGAGGAAACTGAGGGAATGATGTTACTTGATAGGAAAGCTAGGAGTAGAGAGAGGATCAAGAGATTTCTTCAATCGGTTGAGGATGATGATGACAACGACGACAATGAAGCACCGAAACCAAATGTGTCTCAGACGTGTCATCAATGCCAGAGAAGTGATCGGAGTGTTGTTCATTGTGGAGACTGCAAAATCAAACGCTTTTGCGTCGTTTGTATTCGGAGATGGTATCCAAAAATGTCTGAGGAGGCTATAGCAGAATCTTGTCCATGTTGTCGACTCAATTGTAACTGCAAGGCATGTTTACGTAGAACAGATGTAAATACTGATTCCAGAGATTCAGGAATGCCCCTTAATCAAGATGAAAAGATTCAATATTTGAAGCATTTGGTGCAAGCATTATATCCTTTCCTGGAACAGTTTAATCACGAGCAGGAGTTAGAAATGGAGATAGAAGCAAAAATTAGAGGGTTATTGCTTTCAGATTTAGAAGTAAACCAAATTATTTGTTCCGAATATGAACGTATTTATTGCAACAATTGCAAAACCTCTATAATTGATTTTCATAGGAGCTGCCCAAATTGTTCGTATGATCTTTGCCTTACTTGTTGCCGGGAAATTCGGGACAATTTCATTCAAGAGGAAATATTTGAGCAATATATTGATGATTCCAATGGTCACTTGCAAAGTGGAAAGCCTTTGGAGCTGCACTCATATGAGAAAGAATCATCAGGCGTTTGTCTTGATTCAAGCTCGAAGAACTCTGTGAGACCCAAGCATGTGTGGAGGATGATGAAAAATGGTGTCATTCCCTGTCCACCAAAGGATAATGATGGTTGTGGACATGAATATCTTGAGCTGAAGTGCATATTTCCACAAAATTGGATTTCAGAATTAAAGGAAAAAGTGACAAGATTAGTCAAAGAGCATGGACCAGAAGATATGCCCACAGTTTCTGCACAGTGTACTTCCTGCTTCAAATCACATGATGAAGTTGACTCCATCAACAAGAAGTTGCGAAAAGCTGCCTCTCGAGAAGACTCGGGTGACAACTATTTGTATTGTCCTTTGGCATGTGACATTAAATGTGGGGATTTGGAACATTTCCAGGGTCATTGGATTAAGGGAGAACCAGTTATTGTTAGGAATGCTCTTGAGTTAACATCTGGCTTGAGCTGGGAGCCAATGGTAATGTGGCGTGCAATGCGTGAATTGACTATTCAGGGTTCCAAACATTTGAATGTCAAGGCAATTGACTGCCTAGATTGGTGTGAGGTTGAAATAAATATCCATCAATTTTTCAAGGGATACTCGGAGGGTCGTGCTCATTGGAACTCCTGGCCTGAGATGCTCAAACTCAAAGATTGGCCCCCTTCTAATTTATTTGAGCAGAGGTTACCACGTCATGGTATGGAGTTTATTAGTGCCTTACCCTACAAAGAGTATACACATCCTCGCTCTGGTTTTCTTAACATGGCCACAAAGCTGCCAGAAAATTCTTTGAAACCTGACTTGGGGCCAAAGACATATATAGCATATGGCTTTACCGAAGAGCTTGGACGTGGAGATTCTGTGACCAAGCTTCATTGTGACATGTCAGATGCGGTAAATATCTTGACACATACTGAGGAAGTGACCCTCACTTCTCAACATCGTACCAAAATAGAGAAGTTGAAACAACAGTATGCCGCTGAAGACACAAGTGAACTTTTTCAGGTTTTACAGGAAGATAATACTGAGGTGAAGTGCAAATCAACATTAGAAGAAAATACTTCATTGCTGGCAGTAGATGCTTTGTCAGTTCTCAAAGGGTCTTCCCACATCCAAATGGAAAATGATGGGTCCTGCAGAAAGCATGCAACTGCTAAACCACCAAATGATAGCTTTGTTGAGAAAAATGGTGAGGCTGTGGCTTCTGATGGGGAACCAGATTCTTCTACACCTGGAATTGGAGTTCTAGTAGGTGCTCATGCTGTATTGCACGAGAATATCAATGTAAATTCTTCGAATGCAGTAACTGCTACTAGTGAGGAAGATCTTAAGAAGGAAGATGGGAAGGCGCTGAGTAAGTGTGATGTTAACTTGGTGGTTGTTGAAGCTAAGGAGAAATGGAGCAGCTTTATTGATAGTAAACCTGAAGTTGATGAAGATTTTATCTCTTTGGTTAATAGGAGAAGAAATGATGAAATGCATGATATCATTACTAACAAAATGGTAGCAAATTCAGGAATTTCTTTGGAAAAGGAAGCTTCTGAAGAAGGGAATGTAATTCTTGGGAGGGAAAAGGCAGTCCAATCACCACATGATTTAGATGAGTCAGAAATATATGCCATGAGTAATGAGTTTCAAATTGAAAAAAAAGACTTGAGGGAAGAAAATGTTGGGGATGCAACAAAAGCTAATACTGATTTCTCCAATGTGCATACTTTAACAAATGAGGCTCTGCAGCAGGATGCAGGATGTATTAGTCAACCTGTGGATTATGGAAATTTGTATAGTGGACAAGAATTAGCCGAGGGAGGTGCTGTCTGGGATATATTTCGGAGACAAGATGTGCACAAGCTTGAGGAATACCTTAGAAAGCATTGTAGGGAATTCAGGCATCTCCATTGTTCTCAAGTGGAGAAGGTTTTTCACCCCATTCATGATCAAGTTTTTTATCTAAATTCTCATCATAAAAGGAAGCTCAAGGAAGAATTTGGAGTTGAACCTTGGACTTTTATACAAAACCTTGGTGAGGCTGTCTTTATACCTGCTGGGTGTCCCCATCAAGTTAGAAACTTAAAGTCATGCATAAAGGTTGCTCTAGATTTTGTCTCTCCTGAAAATATCCAGGAGTGTATTCGTCTGACTGAAGAATTTCGCACTCTTCCCCCAAGCCATAGAGCTAAGGAAGATAAACTTGGGGTAAAGAAAATGTGTCTCTATGCATTAAGCCAGGCTGCAGACGATTTGGAGAAGCTCGTAGGATGA 3564 0.4085 MEKKVPTVTPPDDLRCQRNDGKSWRCRHWRIHEQNYCEEHYLYYQAKSLHLNNFKSTKSKLSSASASAPLDYEEEDDRSVRRNRSFKHQSNHKKNKKKLLEDEKTIPEKKKKNNNNKCKRILEDEEVIPEKKNRNNLPEYEETVLEKKKRKRLLEDEEIVQEKKKKKLKRLLEEEEIVPEEKNKKKMKLKVERESQKEEETEGMMLLDRKARSRERIKRFLQSVEDDDDNDDNEAPKPNVSQTCHQCQRSDRSVVHCGDCKIKRFCVVCIRRWYPKMSEEAIAESCPCCRLNCNCKACLRRTDVNTDSRDSGMPLNQDEKIQYLKHLVQALYPFLEQFNHEQELEMEIEAKIRGLLLSDLEVNQIICSEYERIYCNNCKTSIIDFHRSCPNCSYDLCLTCCREIRDNFIQEEIFEQYIDDSNGHLQSGKPLELHSYEKESSGVCLDSSSKNSVRPKHVWRMMKNGVIPCPPKDNDGCGHEYLELKCIFPQNWISELKEKVTRLVKEHGPEDMPTVSAQCTSCFKSHDEVDSINKKLRKAASREDSGDNYLYCPLACDIKCGDLEHFQGHWIKGEPVIVRNALELTSGLSWEPMVMWRAMRELTIQGSKHLNVKAIDCLDWCEVEINIHQFFKGYSEGRAHWNSWPEMLKLKDWPPSNLFEQRLPRHGMEFISALPYKEYTHPRSGFLNMATKLPENSLKPDLGPKTYIAYGFTEELGRGDSVTKLHCDMSDAVNILTHTEEVTLTSQHRTKIEKLKQQYAAEDTSELFQVLQEDNTEVKCKSTLEENTSLLAVDALSVLKGSSHIQMENDGSCRKHATAKPPNDSFVEKNGEAVASDGEPDSSTPGIGVLVGAHAVLHENINVNSSNAVTATSEEDLKKEDGKALSKCDVNLVVVEAKEKWSSFIDSKPEVDEDFISLVNRRRNDEMHDIITNKMVANSGISLEKEASEEGNVILGREKAVQSPHDLDESEIYAMSNEFQIEKKDLREENVGDATKANTDFSNVHTLTNEALQQDAGCISQPVDYGNLYSGQELAEGGAVWDIFRRQDVHKLEEYLRKHCREFRHLHCSQVEKVFHPIHDQVFYLNSHHKRKLKEEFGVEPWTFIQNLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENIQECIRLTEEFRTLPPSHRAKEDKLGVKKMCLYALSQAADDLEKLVG* 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03373 1187 Coils Coil 137 174 - -
Rops11g03373 1187 Pfam WRC 11 48 IPR014977 -
Rops11g03373 1187 MobiDBLite consensus disorder prediction 95 120 - -
Rops11g03373 1187 FunFam Transcription factor jumonji (JmjC) domain-containing protein 968 1161 - -
Rops11g03373 1187 ProSiteProfiles JmjC domain profile. 682 1152 IPR003347 -
Rops11g03373 1187 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 12 1185 IPR045109 GO:0032454|GO:0033169
Rops11g03373 1187 ProSiteProfiles WRC domain profile. 10 56 IPR014977 -
Rops11g03373 1187 MobiDBLite consensus disorder prediction 221 242 - -
Rops11g03373 1187 SUPERFAMILY Clavaminate synthase-like 562 1183 - -
Rops11g03373 1187 CDD cupin_RmlC-like 1075 1136 - -
Rops11g03373 1187 SMART cupin_9 663 1152 IPR003347 -
Rops11g03373 1187 MobiDBLite consensus disorder prediction 807 847 - -
Rops11g03373 1187 Gene3D Cupin 956 1161 - -
Rops11g03373 1187 Gene3D Cupin 548 788 - -
Rops11g03373 1187 MobiDBLite consensus disorder prediction 61 120 - -
Rops11g03373 1187 Pfam JmjC domain, hydroxylase 1036 1135 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03373 Rops-Chr11 64846967 64861873 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops11g03373 JmjC 1.5e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03373 K15601 - gmx:100808936 1440.63