Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03361 ATGGAAGCCATGTCATCTGTTCTCAAGGAATACTTTGGGTTTTCGGATTTTCGACCTTATCAAAAAGAGGTCATTGATAAAGTTATTGAGAAAAGGGATTGCTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTGCCTCCCTTGGTTGTTAGGAAGACAGGGATAGTTGTAAGCCCTCTGATATCATTGATGCAAGACCAGGTAATGGCTTTGAAACAGCGCGGTATCAAAGCTGAGTATCTTGCAAGTACTCAGAAGGATTCCACCATTCAGACTAAAGCTGAGGGTGGTCAATTTGACATTCTGTTTATGACTCCTGAAAAGGCATGCATAATTCCTACCAGTTTTTGGTCCAACTTGCTAAAGGCGGGAATTAGTCTTTTTGCTGTTGATGAAGCACATTGCATATCAGAATGGGGGCACAATTTTAGGATGGAATACAAGCAGTTAGACAAACTACGTGGTGTTCTATCAGATGTTCCTTTCATTGGTCTAACTGCAACTGCTACTGAAAAGGTTCGATTTGATATCATCAGTTCCCTTAAAATGAATAATCCTTACGTTTTGGTTGGTTCATTTGATCGCCCAAATCTTTTCTATGGTGCCAAGCTATTTAACCGGGGACAATCTTTTATTGATGATCTTGTACGAGAAATTTCAAAAAAAGTTGCTAGTGGTGGTTCAACTATAATTTACTGCACAACAATCAAAGCTGTAGAGCAGATATTCGAGTCACTTGTGGAGGTAGGTATTAGGGCTGGAAAGTACCATGGCCAAATGGATGGAAAGTCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAGCTGCAAATCATGGTGGCCACAATAGCTTTTGGCATGGGCATAGATAAACCTAACATAAGACAAGTGATTCACTATGGTTGCCCAAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTAGAGATGGCATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGTGAATTTTATTGTGGAGATTTAAAATCAGAAAACCAAAAAAAAGCTGTTATGGAGTCATTGCTAGCTGCTGAACACTATTGTGTGCTGCCAACTTGCAGAAGAAAGTTCTTGCTTGAATATTTTGGGGAAAAATTTTCAGCTGATAGATGTGGAAACTGTGATAACTGTACAATCTCAAAGAAGGAGCGGGACATGTCGAGAGAAGCATTTCTTTTAATGGCTTGCATTCATTCATGCAGGGGCAAATGGGGCCTTAATATGCCCATTGATATCCTGCGTGGGTCTCGAGCTAAGAAAATTATCGATGCTCAGTTTGACAAGCTTCCACTTCATGGACTTGGAAAAACTTTCCCAGCAAATTGGTGGAAAGCACTTGGACGTCAATTGATTTCTCAAGGTTATTTGAAGGAGACTGTTAGTGACATGTACAGAACTATAAGCGTCAGTTCAAAAGGAGAACAATTTTTGGCCTCTTCTAGACCGGATTATCAACCTCCTTTAGTCTTGTCATTGACTGCTGAAATGATTGGAGAAGAGGAAAATAGCACAGAAGAATTCAAAATTTTAGCTACTTCGAAATTGGAGGGTATTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTAGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCACCATATGCTCTATGTGGTGATCAAACGATCAAGAAAATTGCTTTGACACGACCATCTTCAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACAAAATATGGAGATCATTTTCTTCGAGTTATTCGGAAACTGTCACAAGAATTAAACCTATCATTGGATGGGGAAGCTAGTCTGCAAGCTAATGAAGTACGGCAAGTATCTCCAGTAACCAACAAAACAAGGAAGCTGACACCAGCAAAATTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTATTCAGAAGATTGCTAATTTTCCAAGTAGAGCATTACCTATAAAAGAACAAACTGTTGTTGAATATCTGCTGGAAGCTGCCCAAGAAGGATTGCCTTTTGACTGGACTAGATTGTGTGAGATGATAGGACTGACACAAGGGATCATATCAGAAATTAAGGGTGCTATTTCAAAGGTTGGATCTGCAGATAAGCTGAAGCCTATTAAAAATGAATTGCCAGAAGAAATAGGTTATGAGCACATCAAAATTTATTTGACTATGCAAAAATGTGGAATATCCAAGGAAAGCATTCAATCTGGAGGTCACCAGTCTACGGAAGAAGATGAAGCTGTAAATAATGCATCAAATTTGTCAGAACCTTCTTTAGAAACATGCCACGTGGAAAGGCATCATGAAGCTGACATTTTTGCAAAAAATTTGGCAGAAAAATGTGACTTAGAAATTGATGAAGTAGTACCTTCTGAACCTGTCAATGGTTCCCATGTACAGAAGCTTCCATTAGCCTGTGAGGGGGAATTCCCAAGCAAACGACAAAAAGTCGGTGAAACTGAGGAAGCAAATTCAGTTAAACTGAAGGCGACAGAGAGTTCTGTTGTAGAGTGGCTGAAGGACCTTAAAGAAGGGGCTACTTTGATTGACATGTTGGAGCACTTCAATGGATCCAATGAAGGTTCCGTGGTTGAATTGCTAAATTGCCTTGAGTCTGACTTTTGGATATATAAGAAAAGTAACAAGTATTGGGCTATGTAA 2739 0.3998 MEAMSSVLKEYFGFSDFRPYQKEVIDKVIEKRDCLVVMATGSGKSLCYQVPPLVVRKTGIVVSPLISLMQDQVMALKQRGIKAEYLASTQKDSTIQTKAEGGQFDILFMTPEKACIIPTSFWSNLLKAGISLFAVDEAHCISEWGHNFRMEYKQLDKLRGVLSDVPFIGLTATATEKVRFDIISSLKMNNPYVLVGSFDRPNLFYGAKLFNRGQSFIDDLVREISKKVASGGSTIIYCTTIKAVEQIFESLVEVGIRAGKYHGQMDGKSREESHRLFVRDELQIMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGEFYCGDLKSENQKKAVMESLLAAEHYCVLPTCRRKFLLEYFGEKFSADRCGNCDNCTISKKERDMSREAFLLMACIHSCRGKWGLNMPIDILRGSRAKKIIDAQFDKLPLHGLGKTFPANWWKALGRQLISQGYLKETVSDMYRTISVSSKGEQFLASSRPDYQPPLVLSLTAEMIGEEENSTEEFKILATSKLEGISEAEGQLYQMLLEERLKLARSVGTAPYALCGDQTIKKIALTRPSSKARLANIDGVNQHLVTKYGDHFLRVIRKLSQELNLSLDGEASLQANEVRQVSPVTNKTRKLTPAKFEAWKMWHEDGLSIQKIANFPSRALPIKEQTVVEYLLEAAQEGLPFDWTRLCEMIGLTQGIISEIKGAISKVGSADKLKPIKNELPEEIGYEHIKIYLTMQKCGISKESIQSGGHQSTEEDEAVNNASNLSEPSLETCHVERHHEADIFAKNLAEKCDLEIDEVVPSEPVNGSHVQKLPLACEGEFPSKRQKVGETEEANSVKLKATESSVVEWLKDLKEGATLIDMLEHFNGSNEGSVVELLNCLESDFWIYKKSNKYWAM* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03361 912 Gene3D HRDC domain 524 622 IPR044876 -
Rops11g03361 912 CDD SF2_C_RecQ 200 335 - -
Rops11g03361 912 CDD DEXHc_RecQ 6 199 - -
Rops11g03361 912 Pfam RecQ zinc-binding 339 400 IPR032284 -
Rops11g03361 912 MobiDBLite consensus disorder prediction 759 779 - -
Rops11g03361 912 NCBIfam RecQ family ATP-dependent DNA helicase 6 458 IPR004589 GO:0004386|GO:0006310
Rops11g03361 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 340 IPR027417 -
Rops11g03361 912 FunFam ATP-dependent DNA helicase 200 401 - -
Rops11g03361 912 Gene3D - 1 198 IPR027417 -
Rops11g03361 912 ProSiteProfiles HRDC domain profile. 541 621 IPR002121 GO:0003676
Rops11g03361 912 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Rops11g03361 912 FunFam ATP-dependent DNA helicase 402 526 - -
Rops11g03361 912 SUPERFAMILY HRDC-like 540 620 IPR010997 GO:0000166|GO:0044237
Rops11g03361 912 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Rops11g03361 912 Pfam Helix-turn-helix domain 652 748 IPR029491 -
Rops11g03361 912 SMART helicmild6 245 326 IPR001650 -
Rops11g03361 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 380 IPR001650 -
Rops11g03361 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Rops11g03361 912 Gene3D - 200 402 IPR027417 -
Rops11g03361 912 Pfam HRDC domain 546 611 IPR002121 GO:0003676
Rops11g03361 912 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
Rops11g03361 912 SMART ultradead3 13 208 IPR014001 -
Rops11g03361 912 Pfam RQC domain 404 501 IPR018982 GO:0006260|GO:0006281|GO:0043138
Rops11g03361 912 Gene3D - 403 523 IPR036388 -
Rops11g03361 912 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 678 - -
Rops11g03361 912 FunFam ATP-dependent DNA helicase 1 198 - -
Rops11g03361 912 FunFam ATP-dependent DNA helicase 537 627 - -
Rops11g03361 912 Pfam Helicase conserved C-terminal domain 219 325 IPR001650 -
Rops11g03361 912 SMART hrdc7 541 621 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03361 Rops-Chr11 64695765 64719554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03361 235 342 Eukaryotic Initiation Factors Gene Family AT3G19760 27.778 5.74e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03361 K03654 - gmx:100797777 1518.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03361 11 64695765 64719554 Rops11g03361 11 64695765 64719554 ECH