Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03335 ATGGAACATAAGCTAGCTACAACAAGTGAAGGACAACCAATAAGATGCAAAGCGGCGGTTGCAAGAAGACCTGGTGAGCCATTGGTCATTGAGGAGATTATTGTGGCGCCACCAATGCCACGTGAGGTTCGGATTCGTATTATATGTACCTCTCTCTGCCACAGTGATATCACTTTTTGGAAGATGCAGGACCCTCCTGGCTATTTTCCAAGAATTCTGGGTCATGAAGCAACTGGGGTTGTAGAAAGTGTAGGGGAGGGTGTAACTGAAGTTACAAAAGGAGATGTGGTTATTCCAATTTTCCTACCAGATTGTGGGGAGTGTATAGATTGCAAATCAACCAAGAGTAATCGTTGTACTAATTTCCCTTTCGAGGTGTCTCCTTGGATGCCTAGACATGGTACCACTAGATTCACTGACCTAAATGGAGAGATCATACACCATTTCTTGTTTGTTTCAAGTTTCAGCGAATACACTGTGGTTGACATTGCCAATGTGACAAAGATTGACCCAGAAATCCCTCCTAACAGAGCATGCCTTCTCAGTTGTGGCATATCAACGGGGGTAGGTGCTGCTTGGAGAACAGCAGGTGTGGAGCCAGGGTCTACAGTAGCTATTTTTGGGCTCGGTTCTATTGGATTAGCAGTTGCAGAGGGAGCTAGACTTTGTGGAGCATCTAGGATTATTGGTGTGGATGTTAACCCAGAAAAATTTGAAATTGGAAAGAAGTTTGGACTCACAGACTTTGTCCATGCTGGAGAATGTGGGAACAAACCTGTCAGCCAGGTTATCATAGAGATAACTGGTAGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTACATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGGAAAACAATTGTTTTAGGATTGGACAAGCCTGGAGCCAGGTTGAGCCTCAGTTCTAGTGAGGTCGTTCATGATGGGAAGAGCCTCATGGGATCCTTGTTTGGAGGACTCAAACCAAAGTCTCATGTACCCATTCTCCTTAAACGTTACATGGACAAGGAACTACAGTTGGATGAATTTGTCACTCATGAGGTGGAGTTTAATAACATCAATAAAGCTTTTGATTTATTGAGTAAAGGACAGTGTCTTCGATGAAAGAAGTTTGGACTCACAGACTTTGTCCATGCTGAAGAATGTGGGAACAAACCTGTCAGCCAGGTTATCATAGAGATAACAGGAGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGGTACATGAAGCATATGCTTACCATTCTCACGAACTGCAGTTGGATGAATTTGTCACTCATGAGGTGGAGTTTAAGGACATCAATAAAGCTTTTGATTTATTGAGTAAAGGACGGTGCCTTCGATGTGTGATTTGGATAGACAAATGA 1419 0.4327 MEHKLATTSEGQPIRCKAAVARRPGEPLVIEEIIVAPPMPREVRIRIICTSLCHSDITFWKMQDPPGYFPRILGHEATGVVESVGEGVTEVTKGDVVIPIFLPDCGECIDCKSTKSNRCTNFPFEVSPWMPRHGTTRFTDLNGEIIHHFLFVSSFSEYTVVDIANVTKIDPEIPPNRACLLSCGISTGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGASRIIGVDVNPEKFEIGKKFGLTDFVHAGECGNKPVSQVIIEITGRGADYCFECVGMASLVHEAYASCRKGWGKTIVLGLDKPGARLSLSSSEVVHDGKSLMGSLFGGLKPKSHVPILLKRYMDKELQLDEFVTHEVEFNNINKAFDLLSKGQCLR*KKFGLTDFVHAEECGNKPVSQVIIEITGGGADYCFECVGMASLVHEAYAYHSHELQLDEFVTHEVEFKDINKAFDLLSKGRCLRCVIWIDK* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03335 471 Gene3D - 188 328 - -
Rops11g03335 471 SUPERFAMILY GroES-like 422 468 IPR011032 -
Rops11g03335 471 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Rops11g03335 471 Gene3D - 19 380 - -
Rops11g03335 471 FunFam S-(hydroxymethyl)glutathione dehydrogenase 188 328 - -
Rops11g03335 471 Pfam Alcohol dehydrogenase GroES-like domain 41 168 IPR013154 -
Rops11g03335 471 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 348 IPR036291 -
Rops11g03335 471 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 380 430 IPR036291 -
Rops11g03335 471 Gene3D - 397 471 - -
Rops11g03335 471 FunFam Alcohol dehydrogenase 6 19 199 - -
Rops11g03335 471 SUPERFAMILY GroES-like 9 194 IPR011032 -
Rops11g03335 471 PANTHER ALCOHOL DEHYDROGENASE 11 377 - -
Rops11g03335 471 Pfam Zinc-binding dehydrogenase 212 332 IPR013149 -
Rops11g03335 471 SUPERFAMILY GroES-like 336 381 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03335 Rops-Chr11 63985284 63993631 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03335 41 209 Monolignol Biosynthesis Gene Families AT4G37970 26.163 2.46e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03335 K00121 - gmx:100817521 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g03335 11 63985284 63993631 Rops9g00624 9 8882286 8885604 PCT