Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03332 ATGGAACATAAACTAGCAACAACAACTGAAGGACAACCTATAAGATGCAAAGCGGCGGTTGCTAGAAGGCCCGGTGAGCCATTGGTGATTGAGGAGATCATGGTGGCACCACCAATGCCTCGTGAGGTTCGGATCCGTGTTATATGTACCTCTCTCTGCCACGTCGACATCACTTTTTGGAAGATGCAGGACCCTCCTGGCTATTTTCCAAGAATTCTGGGTCACGAGGCAGTGGGGGTTGTGGAAAGTGTAGGGAAAGATGTAACTGAAGTTACGAAAGGAGATCTGGTTATTCCAATTTTCCTACCAGATTGTGGGGAGTGTATAGATTGCAAATCAACCAAGAGCAACCTTTGTAATAATTTTCCTTTTAAGGCTACTCCCTGGATGACTAGACATGATACCACTAGATTCACTGACCTAGAAGGAGAGATCATATACCATTTCATGTTTATTTCTAGTTTCAGTGAGTACACCGTGGTTGACATTGCCAATATAACAAAGATTGACCCGGAAATTCCTCCTGACAGGGCATGCCTTCTCAGTTGTGGTATAGGAGCAGGGGTAGGTGCTGCTTGGAGAACAGCAGGTGTGGAGCCAGGGTCTACAGTAGCTATTTTTGGGCTGGGATCTATTGGATTGGCAGTTGCAGAGGGAGCCAGACTTTGTGGAGCAACCAGGATCATAGGTGTAGATGTCAACCCAGAAAAATTTGAAATTGGAAAAAAGTTTGGAGTCACAGACTTTGTCCATGCTGGGGAATGTGGAAACAAACCTGTGAGCCAGGTTATCATAGAGATAACTGGTGGGGGAGCAGATACTTGCTTTGAATGTGTTGGTATGGCATCATTGGTGCACGAAGCCTATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGACTGGACAAGCCAGAAGCCAGGTTGAGCCTCAGTTCTAGTGAGGTCCTTCATGATGGGAAGACCCTCAAGGGAAACTTATTTGGAGGACTCAAACCTAAGTCTCATGTATCCGTTCTCCTCAAACGTTACATGGATAAGGAACTGCAGTTGGATAAATTTGTCACTCATGAGGTGGAGTTCAAGGACATCAATAAAGCTTTTGATTTATTGAGTAAAGGGAAGTGTCTTCGATGTGTAATTTGGATGGACAAATGA 1164 0.4467 MEHKLATTTEGQPIRCKAAVARRPGEPLVIEEIMVAPPMPREVRIRVICTSLCHVDITFWKMQDPPGYFPRILGHEAVGVVESVGKDVTEVTKGDLVIPIFLPDCGECIDCKSTKSNLCNNFPFKATPWMTRHDTTRFTDLEGEIIYHFMFISSFSEYTVVDIANITKIDPEIPPDRACLLSCGIGAGVGAAWRTAGVEPGSTVAIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKFEIGKKFGVTDFVHAGECGNKPVSQVIIEITGGGADTCFECVGMASLVHEAYASCRKGWGKTIVLGLDKPEARLSLSSSEVLHDGKTLKGNLFGGLKPKSHVSVLLKRYMDKELQLDKFVTHEVEFKDINKAFDLLSKGKCLRCVIWMDK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03332 387 FunFam S-(hydroxymethyl)glutathione dehydrogenase 188 328 - -
Rops11g03332 387 Gene3D - 188 328 - -
Rops11g03332 387 FunFam Alcohol dehydrogenase 6 19 198 - -
Rops11g03332 387 SUPERFAMILY GroES-like 337 384 IPR011032 -
Rops11g03332 387 Pfam Zinc-binding dehydrogenase 212 332 IPR013149 -
Rops11g03332 387 SUPERFAMILY GroES-like 9 191 IPR011032 -
Rops11g03332 387 Gene3D - 19 380 - -
Rops11g03332 387 PANTHER ALCOHOL DEHYDROGENASE 11 383 - -
Rops11g03332 387 Pfam Alcohol dehydrogenase GroES-like domain 41 168 IPR013154 -
Rops11g03332 387 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Rops11g03332 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 348 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03332 Rops-Chr11 63846394 63851423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03332 41 334 Monolignol Biosynthesis Gene Families AT4G37990 24.324 2.12e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03332 K00121 - gmx:100817521 684.1