Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03330 ATGGCGCATAGATTGCTGAGGGACCATGAAGCCGACGGTTGGGAGCGTTCCGATTTCCCCATCATCTGTGAATCTTGCCTTGGCGACAGCCCTTATGTTCGAATGACAAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACCCGGCCATTTACTGTTTTTAGATGGAGACCTGGTCGAGATGCCAGATATAAGAAAACTGAGATCTGCCAGACATGTAGTAAGTTGAAAAATGTTTGTCAAGTGTGCCTTCTTGATCTTGAATATGGACTACCAGTTCAGGTCCGGGACACAGCTCTGAGTATCAATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAAGGAGTATTTTGCTGAAGAGCATGACCGCAGGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGCAAAGCCCGCCCCAGTGATACTATACTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAATCGGGCGCATATTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCGGTAACTGGAGAGTTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTAGCTATGAAGCTACTTGGCAAGGCAGGAGAGATGACCTCTCTAGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTACGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGCGATCACTTCTATGCCCATGGAGAAATTGAGTCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCTGCAGAAGAACTCTCCAATAAACTAGTTATCAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGTCATCAAAACCTGAGTCCGATGGCTCTGATCAAGCCAGGCAGCAGGCATCTGTGGCTCATAGTGGATTGTTGCCTCGAGCGGTTATATCACAGCAGCAGAACCAGGACCAATCCCAGGGAATGCTTTACTATAACAATCCACCTCTTCCTCAGCAGGAAAGAAGCTATTACCCTTCAATGGATCCTCAAAGAATGGGTGCTCTTGTTCCATCTCAAGACGGTCCTCCTGGTGGGCCTACTGGGTCAGGGGAGAACAAACCCAGTTTGGAGAAGCAGCCAATGCAACATTATGGCCATCCAATGATGCCACCTCCATCTGGACAATATCATCATCAGTATCATCCTCCATATGGTTATATGCCACCAGTTCCCCCTTATCAACAGTACCCACCACCTTACAATGCTGCAATGGCTCCATCCCAACCACCAGCTGCAAATCATCCCTATCAGCATACTATGCAGCCAGGGTCTTCACAAACAGGGTCTGTACAGGCTGGGTCTGCACCAGCCGAAACTGGAACATCAACATCAGGGTCACAGCAGCAATGA 1455 0.4708 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNKEYFAEEHDRRARAGIDYESSYGKARPSDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQSSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQSQGMLYYNNPPLPQQERSYYPSMDPQRMGALVPSQDGPPGGPTGSGENKPSLEKQPMQHYGHPMMPPPSGQYHHQYHPPYGYMPPVPPYQQYPPPYNAAMAPSQPPAANHPYQHTMQPGSSQTGSVQAGSAPAETGTSTSGSQQQ* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03330 484 Coils Coil 482 484 - -
Rops11g03330 484 SUPERFAMILY RNA-binding domain, RBD 222 310 IPR035979 GO:0003676
Rops11g03330 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Rops11g03330 484 MobiDBLite consensus disorder prediction 419 440 - -
Rops11g03330 484 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Rops11g03330 484 SMART rrm1_1 229 297 IPR000504 GO:0003723
Rops11g03330 484 MobiDBLite consensus disorder prediction 333 360 - -
Rops11g03330 484 MobiDBLite consensus disorder prediction 300 321 - -
Rops11g03330 484 MobiDBLite consensus disorder prediction 304 320 - -
Rops11g03330 484 MobiDBLite consensus disorder prediction 447 484 - -
Rops11g03330 484 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 376 IPR039171 GO:0003723
Rops11g03330 484 Gene3D - 213 310 IPR012677 -
Rops11g03330 484 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Rops11g03330 484 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Rops11g03330 484 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Rops11g03330 484 Gene3D - 149 212 - -
Rops11g03330 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Rops11g03330 484 CDD RRM_RBM22 227 300 - -
Rops11g03330 484 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Rops11g03330 484 MobiDBLite consensus disorder prediction 333 484 - -
Rops11g03330 484 Pfam Torus domain 133 194 IPR032297 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03330 Rops-Chr11 63827102 63838526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03330 220 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.667 7.51e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03330 K12872 - gmx:100779917 867.84