Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03321 ATGTCGGGTCGAGGTGGAAGGGAGCGGTATAGGAGGGATTACCCTTCAAGATATGAAGATAACAAAGGGAATGGTGTTTCGGGGCGTGGCAGTGGCAACAACAACAGCAACAACCCTCCTTCCAGGCACCTTTGGGTTGGGAATCTATCCCACAACATTGTAGAGGATGAACTTGCTCATCATTTCCTACAGTTTGGGCCACTGGAGAGTGTCGCATTCCAGCCAGGCCGCAGCTATGCTTTTGTCAATTTCAAAAGGGATGAAGATGCCATTGATGCCATGAGAGCACTGCAAGGTTTTCCTCTTGCTGGCAACCCGTTTAGGATCGAGTTTGCAAAGGCGGATAAGTCATCGACAATATCACGTGAGGAATATTACTCACGGGAGGAACGGAGATCAGCATCAAGGGGATCTCCTCTCTCCCAAAGAGAATTTAGAGCACGCCAGGGTAGCCCTGAACCTCGTTATTCTGACAAATCCAAGCCAAGTGATAAAAATCCAGAGCCAAGTGAGGTTTTGTGGATTGGGTTCCCAGCTGTGTTAAAGGTGGATGAATCAATCTTGAGAAAGACTTTTTCTCCATTTGGTGAGATTGTGAAGATTACTACATTTCCAGGTCGTAGTTATGCCTTTGTTCGCTTTAGAAGTCTGACATCAGCATGCAGAGCAAAAGACACTCTGAAGGGAAAGTTATTTGGGGATCCTCGGGTACATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCAAGCAGTGGGAGGAGCTCATTTAATGCTCCCCGTTCCCCATTTTACAAGTCAAGTGGTCTTGATGGATCTGAGATCCTTAGGCAGGATAGGAGCTTCAATGGAGATCAGAGCATTAGTTCTCCAAACCATTTCCCGAATTGGGATTCTAGAGATTCTGATGCTTATGATTTTAACAAAAGGGGTTCTTCATGGGCTGCTGGAACTAATGCATACGAGCAAAGGAAAGTTGGAAAGAGGGAGACTCCACTAGGAGTATCACAAGAAATCTATGAACATATGAATAGTCCATCAAGAGAAAGACATGTTCATCTGGGTGATTTTCCACAGAAATTTCCTCAAAAGGGTGCATTTTTTGAAGATCTTCAGGCCTTGCCAGAAGATGTTCCCTATCTACGTGAGGCTAAAAGGCTAAGACATGGTTCTCCTCCTCCTGAGAGAGAGCTTCCAGAGTATCCTTTCTCTGAGTTGGAAAGACAGAAACATGTTTTCCCAAGATTATTATCTGATTTTCCCCAACGTGAGCCTTTTGATAAAAGTTTTGATGCTGGAAACTTTACTTATGGACAAACAATTGATCACCCACCAAATTCACCTCTGGCTCGATTAGATAGACATGAAGGCTGGAAACCTTATGATAGTTTGCACATGGGTCCTGTTGCTCTGCAATCAAATTTTGTTGAGAAGAAAAGATTCACACCTGAACCTGATAATTCATCTGTAGCTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGTGGAACCCCTGTTTGCCGTGCACGCTGCTTCCCTGTGGGGAAAGTCCTAGATATGATGTTACCTGACTTCTTGGATTGCACTGCAAGAACTGGTCTGGACATGCTTTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCTGGGAGTGATGCTGACATTGAATTGTACAATGAATTTATGCATTATCTGGAGGAAAAGCAGCGGGCTGCAGTTGCCAAATTGGATGACAGGACCACCATATTTCTTGTACCTCCATCAGATTTCTCGGAGAAAGTGTTGAAGGTACCTGGTAAATTGAGTATATCTGGTGTTATTCTGAGGTTGGAGAATCCTGGTTTCAATCATGGTCCCATACACAATGAAATAGAAATGAAAAATGAAAACCTGTTGTCCTATAATGAGAATATATTGTATCCGAAGTCATCATTTCCATCAGTACGCATACCTACTTCCCCATCTATTCCAGAATTGGGGAATTCTGGAATAGGCAATCTTTCATTTCTGGGAAATAAATTTGCAGCAGCTCCATCAGTTTCGGATTCAGCTCGTGCAGTGGTTAGCATATCTGAGTCTCATGATGAAAGAAGTCATGACTATCCTCCAATCCAGCTGCGGACATCAGGACCAAACTGGTCTTCTCACAATCTGCAGAACTTAATCTCTAATAGAACTTTACCATTGCAATCAAGTGGTGCTGTTGAACCTATTTCTGAAGAGCGTCAGCCCATCATTCCAAGGGCAGTGCCAGATGTAAACTCAATTCAACATTCACATTTAGATCCTTTATCAATGCCTGTGGGAGCTGTGCCACCAGAACAGCTTGCTCAAATAGCTGCAACTCTTCTTGAGCAGCAGAGACAATCTGGAAGCTCTTTGAGCGCTTCTGCGTTGGGCGATCCCAGGCAGAGATTTAATGGGTCTGACACCTCATATAGACCACCCCAGAAATATGCTACAGAAAACAACCCAGTGAATTCTGAACTCTCAACATCTCAGTTTGGTCAAGTTTTACAATTGCAAAAGCAACAACAGATGTCAAATGTGCCTCAGTTGTCACAGATGGTTCAAAGAGAACCACAAAGAGAGGTTAATGGAAATCAGCAGTTGACAGATAGTAGCTTGCAGGAAGATGCTGAAACAGATCCACAGAAACGTCTTCAAGCAACATTACAGCTTGCTGCTGTTCTTCTTCAGCAAATCCAGCAAGGAAAAGGAAGTTGA 2739 0.4359 MSGRGGRERYRRDYPSRYEDNKGNGVSGRGSGNNNSNNPPSRHLWVGNLSHNIVEDELAHHFLQFGPLESVAFQPGRSYAFVNFKRDEDAIDAMRALQGFPLAGNPFRIEFAKADKSSTISREEYYSREERRSASRGSPLSQREFRARQGSPEPRYSDKSKPSDKNPEPSEVLWIGFPAVLKVDESILRKTFSPFGEIVKITTFPGRSYAFVRFRSLTSACRAKDTLKGKLFGDPRVHICFAKSETGSSSSGRSSFNAPRSPFYKSSGLDGSEILRQDRSFNGDQSISSPNHFPNWDSRDSDAYDFNKRGSSWAAGTNAYEQRKVGKRETPLGVSQEIYEHMNSPSRERHVHLGDFPQKFPQKGAFFEDLQALPEDVPYLREAKRLRHGSPPPERELPEYPFSELERQKHVFPRLLSDFPQREPFDKSFDAGNFTYGQTIDHPPNSPLARLDRHEGWKPYDSLHMGPVALQSNFVEKKRFTPEPDNSSVAEWKWEGTIAKGGTPVCRARCFPVGKVLDMMLPDFLDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDADIELYNEFMHYLEEKQRAAVAKLDDRTTIFLVPPSDFSEKVLKVPGKLSISGVILRLENPGFNHGPIHNEIEMKNENLLSYNENILYPKSSFPSVRIPTSPSIPELGNSGIGNLSFLGNKFAAAPSVSDSARAVVSISESHDERSHDYPPIQLRTSGPNWSSHNLQNLISNRTLPLQSSGAVEPISEERQPIIPRAVPDVNSIQHSHLDPLSMPVGAVPPEQLAQIAATLLEQQRQSGSSLSASALGDPRQRFNGSDTSYRPPQKYATENNPVNSELSTSQFGQVLQLQKQQQMSNVPQLSQMVQREPQREVNGNQQLTDSSLQEDAETDPQKRLQATLQLAAVLLQQIQQGKGS* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03321 912 MobiDBLite consensus disorder prediction 26 43 - -
Rops11g03321 912 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 235 IPR000504 GO:0003723
Rops11g03321 912 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 105 IPR000504 GO:0003723
Rops11g03321 912 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 114 IPR000504 GO:0003723
Rops11g03321 912 CDD RRM_SF 44 110 - -
Rops11g03321 912 PANTHER RNA RECOGNITION MOTIF-CONTAINING 30 906 - -
Rops11g03321 912 MobiDBLite consensus disorder prediction 846 882 - -
Rops11g03321 912 MobiDBLite consensus disorder prediction 148 166 - -
Rops11g03321 912 MobiDBLite consensus disorder prediction 1 19 - -
Rops11g03321 912 FunFam RNA recognition motif (RRM)-containing protein 157 250 - -
Rops11g03321 912 MobiDBLite consensus disorder prediction 846 891 - -
Rops11g03321 912 CDD SPOC_FPA-like 493 612 - -
Rops11g03321 912 MobiDBLite consensus disorder prediction 122 137 - -
Rops11g03321 912 MobiDBLite consensus disorder prediction 1 43 - -
Rops11g03321 912 SUPERFAMILY RNA-binding domain, RBD 160 246 IPR035979 GO:0003676
Rops11g03321 912 CDD RRM_SF 182 239 - -
Rops11g03321 912 SMART rrm1_1 172 240 IPR000504 GO:0003723
Rops11g03321 912 SMART rrm1_1 43 110 IPR000504 GO:0003723
Rops11g03321 912 Pfam SPOC domain 489 602 IPR012921 -
Rops11g03321 912 Gene3D - 26 117 IPR012677 -
Rops11g03321 912 MobiDBLite consensus disorder prediction 245 264 - -
Rops11g03321 912 Gene3D - 118 251 IPR012677 -
Rops11g03321 912 MobiDBLite consensus disorder prediction 122 169 - -
Rops11g03321 912 MobiDBLite consensus disorder prediction 245 262 - -
Rops11g03321 912 SUPERFAMILY RNA-binding domain, RBD 28 119 IPR035979 GO:0003676
Rops11g03321 912 MobiDBLite consensus disorder prediction 795 833 - -
Rops11g03321 912 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 170 244 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03321 Rops-Chr11 63630692 63647934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03321 31 257 Eukaryotic Initiation Factors Gene Family AT4G34110 23.013 3.56e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03321 - - gmx:100811668 1335.09