Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03303 ATGCGAGATGACAATGTGGGTTTGAACGTGAAGAACGTTGCAGTCAAGGACCTCAAGCATGGTTTTGTTGCACCCAACTCAAAGGATGACCTTGCCAAGGAAGCTGCCCAAGTCATTATGGTGAACCACCCGGGCCAGATTGGAAATGAATATGCACATGTGCTTGATTGTCACATTTCCCACATTGCTGTCAAGTTTGCTGGGCTTGCGACCAAGATTGATAGGCATTCTGGTAAGGAGCCCAAGTTTTTGAAGAACGGTTATGCAGGTTTGGTTAAGATGATTCCAACCAAGCCTATGGTTGTTGAGACTCTCTCTACACACCTTCCACTTGGTCGTTTTGCTGTTAGGGGCATGCGTCAAACCGTGGCCGTTGGAGTCATCAAGAGTGTGGAGAAGAAAGACCCCGCATCTTGTTCCAAAAGTTTGTCGGAAAGATGCCATGAGTTGCATGCATGCATGATAACACAGTGA 474 0.4705 MRDDNVGLNVKNVAVKDLKHGFVAPNSKDDLAKEAAQVIMVNHPGQIGNEYAHVLDCHISHIAVKFAGLATKIDRHSGKEPKFLKNGYAGLVKMIPTKPMVVETLSTHLPLGRFAVRGMRQTVAVGVIKSVEKKDPASCSKSLSERCHELHACMITQ* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03303 157 FunFam Elongation factor 1-alpha 30 132 - -
Rops11g03303 157 CDD EF1_alpha_III 36 128 - -
Rops11g03303 157 Gene3D Translation factors 32 132 - -
Rops11g03303 157 PANTHER ELONGATION FACTOR 1 ALPHA 4 138 - -
Rops11g03303 157 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 36 131 IPR009001 -
Rops11g03303 157 Pfam Elongation factor Tu C-terminal domain 35 131 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03303 Rops-Chr11 63144628 63154340 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03303 4 139 Eukaryotic Initiation Factors Gene Family AT5G60390 75.000 8.27e-67 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03303 K03231 - mus:103969643 213.001