Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03297 ATGCAGCTCCCTCTATCTCTTCCAATGGCTGCCGCAGCTGCACGTCCCCTCGTCACCATTCAGTCCCTTGAGGGTGACATGACCACCGATGTTCAAAACGACACCTCCATCAAACATACAAACGTTCTCACGTTCTTCATCCTTCTCTTGATCGGTGTTCTCGCCTTCTCGATCCGTTTATTTCTTGTTATTAAGAAAAATTTTGGCTTGGATCATCGTCTAGGTGACTTGAATGCATGCTCTGATGGTACAAACTTTATGCCACATATCATCACTGTCGATACTAAAGAGGATGTTACAGTGAAGGTGATATCCTTTTCTCAACAAGGGCCCCGATCTATATGCATCTTATCTGCTACTGGTGTAATTTCAAATGTTACACTTCGTCAGCCAGATTCTTCTGGGGATACTTTGACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCCAGATCTTTCATGCTTACTGACAACCAAGGAACAAGAAGCAGGTCAGGTAGGATGAATGTCTCGCTGGCGAGCCCCGATGGTCGTGTTATAGGGGTGGAGTTGCTGGCCTCTTGGTAG 567 0.4586 MQLPLSLPMAAAAARPLVTIQSLEGDMTTDVQNDTSIKHTNVLTFFILLLIGVLAFSIRLFLVIKKNFGLDHRLGDLNACSDGTNFMPHIITVDTKEDVTVKVISFSQQGPRSICILSATGVISNVTLRQPDSSGDTLTYEGRFEILSLSRSFMLTDNQGTRSRSGRMNVSLASPDGRVIGVELLASW* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03297 188 CDD DUF296 88 181 IPR005175 -
Rops11g03297 188 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 181 IPR005175 -
Rops11g03297 188 Gene3D - 88 187 - -
Rops11g03297 188 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 67 181 IPR039605 GO:0003680
Rops11g03297 188 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 181 - -
Rops11g03297 188 ProSiteProfiles PPC domain profile profile. 83 188 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03297 Rops-Chr11 62994281 62994847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03297 74 181 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 77.778 8.23e-54 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03297 - - gmx:100796830 185.267