Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03292 ATGGCAAGCCAGCAAATGATCAATTTTGCTCCTCCTTCTTCTTCTTCTTTGGTGTCTCCTAAAAGATATGATGTTTTTCTTAGCTTTCGTGGTGAGGATACTCGCAAGGGCTTCATAAGTCATCTTCATGAGGTTTTGATCCAAAAGAAAGTTGAAACCTATATAGACTACCGGCTTGAAAAGGGAGACAAGATCTCAGAAGCACTCATCAAAGCCATAGAAGGGTCACATGTATCTGTTGTCATCTTCTCAGAAAACTATGCTACTTCCCATTGGTGCTTGGATGAAATCAGCAAGATTATGGAATGCAAGAAGAAAAAGGGACAAGATGTTATACCTGTGTTCTACGAAGTAGATCCATCACATGTAAGGAATCAGAGAGGGAGCTATGAAGAAGCGTTTGCAAAACATGAGCAAGATCTGAAGATCAGCCATGACAGGGTCCAAAAATGGAGAGGCGCTCTCAGAGAAGCAGCCAATTTGGCTGGGTGGGACTCTCGGACTTATGGGACTGAATCTGGATTCATCAAGGACATTGTCAAAGACATGTTACAAAAACTGAATGTCATATACCCGATTGAATTCAAGGGACTGGTTGGAATCGAGGGAAATTATGCAGAGGTTGAATCATTATTGGACATTGGCTCAAACGAAGTTCGAATGATTGGAATTTGGGGCATGGGTGGCATAGGTAAAACCACCCTAGCTAGTGCTTTACATGCCAAGCTGTATTCTCAATTTGAAAGTCATTGCTTTCTCCCAAGTGTAAGGGAAAATTTAGGAAAGTATGGTCTAGATGTCTTGCGCAACAAGCTTTTTTCTCACTTATTAGGGGAAGAAAATCTTCATGTTGATGTACCCAAAGTTGTACCCAATTTTGTGATGAGTAGGCTTCGACATAAAAGAGTTTTTATTGTTTTGGATGACGTGAATGACTCAGAACAGTTAGAAGATCTAATCGGTGATTATGAATATTTGGGACCAGGAAGTAGGGTGATTGTAACAACTAGAGATAAACACATATTTTGCCACGTTGATGGAGTTTATGAGGTCAAGGAATTGAATGACCATGATTCTCTTCAGCTTTTCTGTTGGAATGCCTTCCGAGAAAAACATCCTAAAGATGGATATGAAGAGCTATCAAAAAATGTAATTGCCTATTGCAAAGGCAATCCTTTGGCTTTGAAAGTTTTGGGTGCACGTTTTCGTTCAAGAAGTACAGAAATATGGAAATGTGAATTGAGAAAGCTCCAAAAGATTCCAAATGTGAAAATTCATAATGTGCTAAAGTTGAGTTTTGATGACTTGGATTGTACTGAGAAGGACATATTTCTTGACATTGCATGCTTTCTCAAAGGAGAATATAGAGATCACGTAACAAGTTTATTGGAAGCTTGTGATTTCTTTGCTGTCGCTGGGGTAGAAGCCCTTTTAGATAAGTCGCTTATACATATTTCAGATAAGTGTACAATAGAAATGCATGACTTGATACAAGAAATGGGCTGGAACATTGTTCGTCAAGAATCTGTCAAAGACCCTGGAAGACGAAGTCGGTTGTGGGATCCCGAGGAAGTGTCTAATGTATTGAAATATGATAGGGGAACCGAAGCTATAGAAGGCATAATGTTAGATGTGTCTAAAATTTGGGATCTACATTTGAGCTTTGGTTGCTTTGCAAAAATGACCAACTTAAGATTTCTTAAAATCCACGATGGGAAGGAGAGTAGTAGTTGTAAGATATACCTTCCTAATGGTCTTGAGTCATTGTCTGACAAATTGAGGTACCTTAAGTGGCATGGATACTCTCAAGAGTCTTTGCCATCAACCTTCAATGCTAAATTGCTTGTTGAGCTCTCCATGCCATTCAGCAACCTTGAAAAGCTTTGGGACGGAGTTCAGAATCTTGTGAATTTGAAGGGATTCGACCTTAGTTTCTCTGATCGCTTGGTTGAGGTCCCAGACTTATCTATGGCCACAAATCTTGAAGGATTATCTCTTACTCAGTGTAAAAGTTTGCGTCATGTTCATCCATCCATTTTGTCTCTCCATAAGCTTCGGCATCTGGATTTAGCAGAGTGCAAAGAGATTGAAAGCCTTCAAAGTGACATTCATTTAAAATCTCTTCGTTTCCTCCGTCTAAGCAACTGCTCATCCCTAAAGGAATTTTCAGTGTCCTCGGAGGAACTAGAGCAATTGTGGTTAGATGGTACAGTTATCCAAGAATTGTCCTCATCAGTATTGCATTGTGCGAAACTTAAGCTTGTCAATCTACAAGATTGTGACAATATTCAGAGTTTTGGGAATCAGTTATCAAATAATCCATTCTGGCTAGGATCTCTTGATCGTCTGGTCCTTGCTGGCTGCAAACTACTCAGTGCATCAAATCTAAGTTTTATCCTTGATGGTCTGCGTTCTTTAACGTTGCTGGATTTGGAAAATTGTTGCAACTTAGAAGCACTCCCTGACAACATTGGCTTGCAATCATCATTACAATGCTTGAAACTAAGTGGAAGCAATGTTGAGAGCTTGTCTACAAACATCAAGAACCTTTTGATGCTGGAAGAGCTTAGGTTAAACAATTGTAGGAAACTCGTGTCTCTGCCAGAACTTCCACCATCCTTGCTGGAGTTAAGTGCCGTTAACTGCACATCTCTTGTGACAGACTTAGCACAATTGTGCATGTCATTTTTACTTATTCCTGGACACAAAAAATATATTTTCCTCCCTGGAGCCCAAGTTCCAGACTGGTTTAGCTGTCATGCAGAAAAGGCTTCTTCAATAACCATTCCCCATCTTCCACTATCTGGCTTATGTGGCTTTATTTTTTGCCTCGTTCTTACTCAATCATCGCCAAAGGACAAATACGACTCCGTTGCATGTTTTATCTACAAATATTATAAAAGAATAAGGAGAGAAGATGCCTTTCTGGATGCTTTGGAATTAATTTCGGATCATGTGTTTCTTTGGTATATTGACATAAAAAAAGATGAAGTGTGTGATCCTTACAACATATTATTTAATTTCGTTCTTCAACATGAGGATGGTGAATGGTCATCGAAGGGGATAAAGGGGTGTGGGGTTTACCCAATATATGCCTCAGAACAAAAAGGATTGGAGTTGGAGTTTGCGAGTAGTTCTAAAGATATTGTTGAGTTAGAACCCAACAGTTCTACAGATATTGATGAGTTGCAGCCCAAAGCAATTGGATTTAGAGTCAAAGAATCGAATCATAACAATGAAGATGACCAAACTAAGAAATTGCAGGATGTTATGCACAAAACAATTACAGTAGGTATGCAAAATGAAAATGTGGGCTTGAATGAAAACTCTTCATGTCACAGCTTCACAGTTTCAACAGCACATCGTTGTCAGAGAAAACCACAAAGTTTCGAGGAAGTGGATTACTGTGTAAGTTCAATACCAAAAAATAAAATTATCCACCTTGACACTCCAATTCAAACTCTTGCGGAGATTGACAATCCACATCTTGAACCGGATTGGGATCCAATTGCCGAGCTCGAGAGCTTGTTATGTGATAGTAATAAGTTGGTTCCAATGTCCATTCACTCAACAACCGTTTCAGAGACTGATGTCCAGGATCCAAATGTGGCTGCTATCCTTGAAAAGTTAGAGTCCCTTTTGGAGACCTCCCTTGAAATTGTCTCTTCAGACAATAAAGTCAAGCAACAATTGCATCATGTTTTGGAACAGTTTGGCCAATTTGAAGACCGAGTACCTATCAAGCTTCATCCGGTGATTCACAAGTTAAAAGCTTTCATTAAAGGTGTTGATGTCAGATTTGCAACCGATCAAATAACTATCCAAAAAAATGATCAACTGCTCAGGTCAAGGTCTCTTCTATCAAAGCAATTGGAAAGTGCCAGAGCCCACCAAGACCAATTTAAGTCCAAAGTCTCTCAAGGTAAAATACAAATTAAAAAGATCAATTCTGAGATTGTTGAACTGGAACAAAAATTGAGTGTTTTGGTTGAGACAAGAGACAGGCTAAAGAGAGCCTTAGACTATTGTGATGTTGAAAATAGCCAGCTAAAGACTCAAGTTGCACAATGGGTGCCAGAATGCAAGACTATCATCACAACTTTGAAGAAGTATGAGTCATCTTACAAAGTGGCCCTAACCAATAAGAAGAAAGCTGAAGATGAATGGGCTGATCTAAAGAAGGCCTTTTTAGCTAATAAGGTTTGA 4206 0.3928 MASQQMINFAPPSSSSLVSPKRYDVFLSFRGEDTRKGFISHLHEVLIQKKVETYIDYRLEKGDKISEALIKAIEGSHVSVVIFSENYATSHWCLDEISKIMECKKKKGQDVIPVFYEVDPSHVRNQRGSYEEAFAKHEQDLKISHDRVQKWRGALREAANLAGWDSRTYGTESGFIKDIVKDMLQKLNVIYPIEFKGLVGIEGNYAEVESLLDIGSNEVRMIGIWGMGGIGKTTLASALHAKLYSQFESHCFLPSVRENLGKYGLDVLRNKLFSHLLGEENLHVDVPKVVPNFVMSRLRHKRVFIVLDDVNDSEQLEDLIGDYEYLGPGSRVIVTTRDKHIFCHVDGVYEVKELNDHDSLQLFCWNAFREKHPKDGYEELSKNVIAYCKGNPLALKVLGARFRSRSTEIWKCELRKLQKIPNVKIHNVLKLSFDDLDCTEKDIFLDIACFLKGEYRDHVTSLLEACDFFAVAGVEALLDKSLIHISDKCTIEMHDLIQEMGWNIVRQESVKDPGRRSRLWDPEEVSNVLKYDRGTEAIEGIMLDVSKIWDLHLSFGCFAKMTNLRFLKIHDGKESSSCKIYLPNGLESLSDKLRYLKWHGYSQESLPSTFNAKLLVELSMPFSNLEKLWDGVQNLVNLKGFDLSFSDRLVEVPDLSMATNLEGLSLTQCKSLRHVHPSILSLHKLRHLDLAECKEIESLQSDIHLKSLRFLRLSNCSSLKEFSVSSEELEQLWLDGTVIQELSSSVLHCAKLKLVNLQDCDNIQSFGNQLSNNPFWLGSLDRLVLAGCKLLSASNLSFILDGLRSLTLLDLENCCNLEALPDNIGLQSSLQCLKLSGSNVESLSTNIKNLLMLEELRLNNCRKLVSLPELPPSLLELSAVNCTSLVTDLAQLCMSFLLIPGHKKYIFLPGAQVPDWFSCHAEKASSITIPHLPLSGLCGFIFCLVLTQSSPKDKYDSVACFIYKYYKRIRREDAFLDALELISDHVFLWYIDIKKDEVCDPYNILFNFVLQHEDGEWSSKGIKGCGVYPIYASEQKGLELEFASSSKDIVELEPNSSTDIDELQPKAIGFRVKESNHNNEDDQTKKLQDVMHKTITVGMQNENVGLNENSSCHSFTVSTAHRCQRKPQSFEEVDYCVSSIPKNKIIHLDTPIQTLAEIDNPHLEPDWDPIAELESLLCDSNKLVPMSIHSTTVSETDVQDPNVAAILEKLESLLETSLEIVSSDNKVKQQLHHVLEQFGQFEDRVPIKLHPVIHKLKAFIKGVDVRFATDQITIQKNDQLLRSRSLLSKQLESARAHQDQFKSKVSQGKIQIKKINSEIVELEQKLSVLVETRDRLKRALDYCDVENSQLKTQVAQWVPECKTIITTLKKYESSYKVALTNKKKAEDEWADLKKAFLANKV* 1402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03292 1401 Coils Coil 1368 1388 - -
Rops11g03292 1401 Pfam TIR domain 23 200 IPR000157 GO:0007165
Rops11g03292 1401 Gene3D Ribonuclease Inhibitor 536 728 IPR032675 -
Rops11g03292 1401 Gene3D Ribonuclease Inhibitor 729 897 IPR032675 -
Rops11g03292 1401 Pfam Leucine Rich Repeat 615 633 IPR011713 -
Rops11g03292 1401 PRINTS Disease resistance protein signature 703 719 - -
Rops11g03292 1401 PRINTS Disease resistance protein signature 221 236 - -
Rops11g03292 1401 PRINTS Disease resistance protein signature 388 402 - -
Rops11g03292 1401 PRINTS Disease resistance protein signature 297 311 - -
Rops11g03292 1401 SUPERFAMILY L domain-like 493 886 - -
Rops11g03292 1401 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 723 IPR044974 GO:0006952
Rops11g03292 1401 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Rops11g03292 1401 Gene3D - 18 187 IPR035897 -
Rops11g03292 1401 Pfam NB-ARC domain 214 420 IPR002182 GO:0043531
Rops11g03292 1401 Gene3D - 353 437 IPR042197 -
Rops11g03292 1401 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Rops11g03292 1401 SMART till_3 22 161 IPR000157 GO:0007165
Rops11g03292 1401 Coils Coil 1305 1339 - -
Rops11g03292 1401 FunFam Disease resistance protein RPS4 535 727 - -
Rops11g03292 1401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 447 IPR027417 -
Rops11g03292 1401 Gene3D - 188 351 IPR027417 -
Rops11g03292 1401 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 164 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03292 Rops-Chr11 62861019 62861783 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03292 19 863 WRKY Transcription Factor Family AT4G12020 33.256 1.51e-118 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03292 - - gmx:100809963 1753.41