Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03260 ATGAAGCTCCAATTGTTGGTTCTGTGCTTCTCTGCCTTATTAATATTACATGATGCATCCACTATGGTCTCAGATGGGGTGACTTTGTTGTCACTCCTGAGGCACTGGACCTTTGTGCCTCCTCACATAAACTCAAGCTGGGTGGCCTCTGATTCCACTCCATGCTCTTGGATAGGAGTCCAATGCAACCTTGCCCATGATGTAGTCTCCCTCAACCTCACTTCTATGGGGATTTTTGGTCAACTTGGACCAGAAATTGGAGACTTGCATCACTTGCAGACCATTGTGTTGTTGAATAACAGTTTCTCAGGTAAAATACTCCCAGAGTTGGGCAATTGTAGTCTGCTTGAGCATTTGGACCTTTCTAAGAACAGTTTTAGTGGAGAGATTCCAAATGAATTGGGAATACTGAGCAAATTAAGTGTCCTTGAATTGTCTTTCAACCGTTTGACTGGTGAAATTCCAGTAAGCATTTGGAGGATTCAAAGTCTTCAGCACATGCTAGTTCATAATAATAGCCTTTTTGGGGAACTGCCTTTACAGATGACGGAGCTCAAGCATCTAAGAAATATTTCATTGTATAACAACCAGTTCTCTGGAGTCATACCCCAAGGCTTGGGAATCAACAGCAGTTTAGTGAAGTTGGATGTTATGAATAATAGGTTCACTGGCAACATCCCACCAAACCTTTGTTATGGAAAGCAATTAAGTGTGCTGAACATGGGACTTAATCAACTTCAAGGTGGGATATCTTCTGATATAGGAAGGTGTGCAAGTCTAAGGAGGTTGATTCTCCAAATGAACAATTTGATTGGGTCTCTTCCTGATTTCAAAAGTAACTCAAATCTCAATTACATGGACATAAGTGAGAACAGAATCAGTGAAACAATTCCACCAAGTTTGGCTAATTGCACAAGCCTTACTGTTATTATTTTTTCAAGGAATAAATTTACTGGGCTCATACCATCAGAGCTTGGAAAGCTTGGGAATCTTTTGATTTTGGATCTTGCTCACAACAACTTGGGAGGTCCTCTGCCATCTCAGCTTTCCAATTGTACTAAAATGGATTGCTTTGATGTGGGATTCAATGAGCTTAATGGTTCATTTCCTTCAAGTTTGAGGAGCTGGATGGGGCTAACCACTTTAATCTTAGAAGAGAATCATTTTACTGGGGGTATCCCCAATTTCTTGTCAGAATTCGACAATCTTCTCGAGCTGAAATTTGGTGGAAATTTGTTCAGAGGTGAAATTCCAAAATCATTGGGAGCATTGCATAATTTAATATATGGGTTGAATTTAAGTGCTAATGGATTGACTGGTGACATTCCTTTAGAAATTGGGAAGCTAATAAAGCTGCAAAGCCTGGATGTATCATTGAACAATTTGACAGGAAGCATCGATGTTCTCGATGAGCTCCTTTCATTAATAGAGGTTAATATTTCATACAACTCCTTTACTGGTCCTGTACCAAAAAAGCTGATGAAGTTTGTGAATTACTCACCTTCTTCTTTCATGGGTAATTCTCTCATATGTATCAGTTGTTCAACTTTAGATGGCTTGAGCTGCACTAAAACTAGCTATTTGAAGCCATGTGTCTATAAATTTATTGATCACAAACACAAAAGAATCAGTATATTTGCAATTGTGATGATAGAAGTTGGATCCTCATTATTTGTATCTGCAATGCTACTAGTATTAGTCCACATCAATCTCCGCAAAAGAACTAAGCAGGAGGTCCATGCCTCAGTTGAAATGGAAGGATCACGGTCTTCAGTTTTTATTGGTAGAGAAGCCAACCAAAATATTGGCCAAATAATTAAGCAAGAAGTCATGATCCGCACTGAAAAGCATTTGTCTTCCCTTGTTCAGCAAGTAATGAAGGTGACTAATAACCTAAGTGATCAATATATTGTTGGAAGGGGAGCCCATGGAATTGTTTACAAAGTCCAATTAAGTCCGGACCAGGACTATGGTGTAGTCTTGTACAAGTACCACGAAAATGGAAGCCTGCATGATGTTTTACATGCTGAAAAGAATCCACCACCATCCTTAAAGTGGAATGTCCGGCTTAAGATAGCTGTTGGAGTTGCAAAGGGACTAGCATATCTGCATTATGACTGTCGACCTCCCATACTGCACAGAGACGTCAAACCAAAGAATATACTTCTTGATTCTAATATGGAGCCTCTTATCACTGATTTTGGTACTGCCCTGCGCAGGAGATGGCGTGAGCACTCTATTTTTAATGAAACTAGGCAAAGGCTTTCAGCACATATAGCTGGCACCATTGGCTATATTGCACCGGAGAATGCATTCTCAACAGTGGTGAGCAGAAAGTCAGATGTTTATAGCTATGGAGTAGTTTTGCTAGAACTAATAACCAGAAGGAAGGTATTAGATCAGTCATTCCTTGATGAGGGAACGAGTTTGGTAAGGTGGGTTAGATCTGTCTACACGGAACCAGAAAAAATTGGAGAGATTGTGGATTCAAGTCTTGCACTTGAATTTTCCCAATCAGTAGTGGAGAAGCAAGTTTCTGCAATGCTTGACATAGCTTTGAGATGTACTCAGAGAGATCCAAGAATTAGACCCACAATACGAAAAGTTATTAAGTTCTATAAGAAACCCATTTTTCTGAAGCACAGGTATGATGATGAATCACCACAGGCACAACCAAGTAAAGACTCCCAAGTGGTCAGTGGTGATTTAGTTCCAAATCCAACTCCAAGGGAAGAAGTTTCCAACTTTTGGCAAACTACAAACTCACTTGAGGAACAAAACAACAAACGTGAGTCCCATGCTGTTTGGAGGTTTCCACCAGAGGGATGGGTTAAAGTTAACACTCATGGCTATGCTACAAAATATGGTCAAGCTGGATGTGGAGGAGTCATGCGTGGGGACAGAGGGGAATGGCTACGAGGTTTTTCAGCGAGTCTAGGAACCTGTACCAATGATGTTGCTGGAATTTGGGGAATATACCATGGACTGATAGAGGCTTGGGATCTTCGGTTTCCAAGAGTTATAATGGAGACAGACTCTATGACAGCAGTGCAGCTGCTCGTTTATGTACCAGCAAAAAAGCTATATAAACCCTTGTCATATGCATATCCCATTGCTCTTTGCCATGAACTCATTCAGAGAGACTGGGAGGTCAAGGTACAGTACATTTTCAGAGAAGGCAACTTTTGTGCTGATTGGCTGGCTGGTCATAGTGGTGTCTACCAACAACCACCAAAGGAACTTGTTGATTTTCTTAACCAGGACATTTCTAGTGCATACAGACATATATGA 3291 0.4063 MKLQLLVLCFSALLILHDASTMVSDGVTLLSLLRHWTFVPPHINSSWVASDSTPCSWIGVQCNLAHDVVSLNLTSMGIFGQLGPEIGDLHHLQTIVLLNNSFSGKILPELGNCSLLEHLDLSKNSFSGEIPNELGILSKLSVLELSFNRLTGEIPVSIWRIQSLQHMLVHNNSLFGELPLQMTELKHLRNISLYNNQFSGVIPQGLGINSSLVKLDVMNNRFTGNIPPNLCYGKQLSVLNMGLNQLQGGISSDIGRCASLRRLILQMNNLIGSLPDFKSNSNLNYMDISENRISETIPPSLANCTSLTVIIFSRNKFTGLIPSELGKLGNLLILDLAHNNLGGPLPSQLSNCTKMDCFDVGFNELNGSFPSSLRSWMGLTTLILEENHFTGGIPNFLSEFDNLLELKFGGNLFRGEIPKSLGALHNLIYGLNLSANGLTGDIPLEIGKLIKLQSLDVSLNNLTGSIDVLDELLSLIEVNISYNSFTGPVPKKLMKFVNYSPSSFMGNSLICISCSTLDGLSCTKTSYLKPCVYKFIDHKHKRISIFAIVMIEVGSSLFVSAMLLVLVHINLRKRTKQEVHASVEMEGSRSSVFIGREANQNIGQIIKQEVMIRTEKHLSSLVQQVMKVTNNLSDQYIVGRGAHGIVYKVQLSPDQDYGVVLYKYHENGSLHDVLHAEKNPPPSLKWNVRLKIAVGVAKGLAYLHYDCRPPILHRDVKPKNILLDSNMEPLITDFGTALRRRWREHSIFNETRQRLSAHIAGTIGYIAPENAFSTVVSRKSDVYSYGVVLLELITRRKVLDQSFLDEGTSLVRWVRSVYTEPEKIGEIVDSSLALEFSQSVVEKQVSAMLDIALRCTQRDPRIRPTIRKVIKFYKKPIFLKHRYDDESPQAQPSKDSQVVSGDLVPNPTPREEVSNFWQTTNSLEEQNNKRESHAVWRFPPEGWVKVNTHGYATKYGQAGCGGVMRGDRGEWLRGFSASLGTCTNDVAGIWGIYHGLIEAWDLRFPRVIMETDSMTAVQLLVYVPAKKLYKPLSYAYPIALCHELIQRDWEVKVQYIFREGNFCADWLAGHSGVYQQPPKELVDFLNQDISSAYRHI* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03260 1096 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 193 522 - -
Rops11g03260 1096 Gene3D Ribonuclease Inhibitor 281 526 IPR032675 -
Rops11g03260 1096 SMART serkin_6 632 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03260 1096 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 174 871 - -
Rops11g03260 1096 ProSiteProfiles Leucine-rich repeat profile. 451 473 IPR001611 GO:0005515
Rops11g03260 1096 Pfam Protein kinase domain 587 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03260 1096 SUPERFAMILY Protein kinase-like (PK-like) 617 871 IPR011009 -
Rops11g03260 1096 Pfam Leucine rich repeat 281 341 IPR001611 GO:0005515
Rops11g03260 1096 Gene3D Ribonuclease Inhibitor 173 280 IPR032675 -
Rops11g03260 1096 SUPERFAMILY L domain-like 359 526 - -
Rops11g03260 1096 SUPERFAMILY RNI-like 70 390 - -
Rops11g03260 1096 Pfam Reverse transcriptase-like 950 1069 IPR002156 GO:0003676|GO:0004523
Rops11g03260 1096 Gene3D Transferase(Phosphotransferase) domain 1 666 899 - -
Rops11g03260 1096 ProSitePatterns Serine/Threonine protein kinases active-site signature. 711 723 IPR008271 GO:0004672|GO:0006468
Rops11g03260 1096 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Rops11g03260 1096 SUPERFAMILY Ribonuclease H-like 955 1070 IPR012337 -
Rops11g03260 1096 Gene3D - 942 1071 IPR036397 GO:0003676
Rops11g03260 1096 FunFam Nuclear pore complex protein NUP107 24 180 - -
Rops11g03260 1096 CDD RNase_H_like 956 1068 IPR044730 -
Rops11g03260 1096 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 665 879 - -
Rops11g03260 1096 Gene3D Ribonuclease Inhibitor 23 172 IPR032675 -
Rops11g03260 1096 ProSiteProfiles Protein kinase domain profile. 578 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03260 Rops-Chr11 62236031 62241538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03260 70 874 Receptor kinase-like Gene Family AT1G73080 44.145 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops11g03260 Pkinase 6.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03260 - - adu:107496742 915.605