Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03251 ATGTGTGTGCACCCAAGAAGAGGCAACGGAGGCTCTACTACGTCTTCTGCATCTAGTGTGTTGAAGGCTAGTGTGAACAAGCAACTACCATCCTACAGTGATTCTATAGGTGCCTGTGATGGACTGTCTTCATCATCACAACACGGTGGGTTGCAATCTGCATGGATGGTGAACCCAAGTCAAGTATCAATGACTGACATTGTCAAGATGGGTCAAGCTTCCAAGGTTTCAGAGACAAATAACGATCAAGGTTTCTCCAATATTCACCCAGTCTTCGCTGCATTGCGTTGGAAGCATGCGCACATCCTTTCTTCGATGAGCTTCGTGAGCCGAATGCCCCTCCACCCTCCTGGCGCACCTGGTTTAGGACGACAATTTTTGCATGGGCAAGGACCCCCTGCCATGATGCCTCCGCAAGCTGGATTTGGTTACCAGCAGCAACATGTTCCAGGGATGAGACCTGGTGGTGCTCCAATGCCAAGCTTCTTTGTTCCCATAGTTCAGCAGGCCCAACAAGGCCAGGTGGACGCCGAGGACAACACCAACGCAAACACCAACACGACCAAAAACGATGAAAGCCGAGATAACAACGTTGAGGAGCAGAACCCTGGTAGTCATGAAGGTGGTGAACCAGGTAGCAGTGGACGCAGGCCACGTGGCAGGCTAGCAAGTTCGAAGAACAAGCCCAAACCACCCATAGTGATAACAAAGGAAAGCCCCAACTCACTTAGATGCCACGTGATAGAAATCAGCCCCGACAGTGACGTGGTGGAGAGAATCGTCACCTTGGCTAACCGACGCCACCATGGTGTGTCAGTGATGAGTGAAAGTGGCATTGTCATAAATGTAACACATAGACAACCTACTGCTCCTGGTGGGGTTATCACTCTCCAAGGAAGGGTAAGGTTGTTGGCGGCACAACCGCGGGGTCATTGGTGGCTTCAGGGTCTGTTATGGCAGTCACTCCAGCCAGATTGCATCAAGATGTTTGTCTTAGATGAGGTTGATGAAATGCTATCCCGAGGTTTCAAAGATCAGATCTACAATATATTTCAGTTGCTGCCATCTAAGATTCAAGTGGGTGTTTTCTCTGCTACAATGCCTCCCAAGGCCCTTGAGATCACAAGGAAGTTTATGAACAAACCTGTGAGGGCCCTTGTGAAGCGTGATGAGCTCACCTTAGAGGACACTGATGAGAAGACGATGAGAGATGGACTGGCCGATGCGAGGTGGAGTGGCCGGCGTGAGTTGGACGGCGCGAGGTGGAGTGGCTGCCGTGAGCTGGACGACGCGAGGTGGAGTGGTCGGCGCAAGCTGGAAGGCGTGATCTAG 1332 0.5143 MCVHPRRGNGGSTTSSASSVLKASVNKQLPSYSDSIGACDGLSSSSQHGGLQSAWMVNPSQVSMTDIVKMGQASKVSETNNDQGFSNIHPVFAALRWKHAHILSSMSFVSRMPLHPPGAPGLGRQFLHGQGPPAMMPPQAGFGYQQQHVPGMRPGGAPMPSFFVPIVQQAQQGQVDAEDNTNANTNTTKNDESRDNNVEEQNPGSHEGGEPGSSGRRPRGRLASSKNKPKPPIVITKESPNSLRCHVIEISPDSDVVERIVTLANRRHHGVSVMSESGIVINVTHRQPTAPGGVITLQGRVRLLAAQPRGHWWLQGLLWQSLQPDCIKMFVLDEVDEMLSRGFKDQIYNIFQLLPSKIQVGVFSATMPPKALEITRKFMNKPVRALVKRDELTLEDTDEKTMRDGLADARWSGRRELDGARWSGCRELDDARWSGRRKLEGVI* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03251 443 CDD DUF296 244 305 IPR005175 -
Rops11g03251 443 MobiDBLite consensus disorder prediction 170 238 - -
Rops11g03251 443 SUPERFAMILY AF0104/ALDC/Ptd012-like 237 305 - -
Rops11g03251 443 Gene3D - 254 396 IPR027417 -
Rops11g03251 443 MobiDBLite consensus disorder prediction 170 191 - -
Rops11g03251 443 SMART ultradead3 137 400 IPR014001 -
Rops11g03251 443 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 385 IPR014001 -
Rops11g03251 443 Pfam DEAD/DEAH box helicase 320 371 IPR011545 GO:0003676|GO:0005524
Rops11g03251 443 Pfam Plants and Prokaryotes Conserved (PCC) domain 244 304 IPR005175 -
Rops11g03251 443 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 179 305 IPR014476 GO:0003680
Rops11g03251 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 386 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03251 Rops-Chr11 61952140 61966172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03251 320 395 Eukaryotic Initiation Factors Gene Family AT1G72730 89.474 2.41e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03251 K03257 - gmx:102667174 149.828