Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03250 ATGGTCCTTTTCTTGAGGAAACTAGATTTGGGCTTGAGCACCATTATGCTGCAGACCAGGTATAAAGAAGTTGCAGAGCATGCTGCAGAATCTCCACGAGGAATACTCCGAACTCCAGACACTGTTGCTAAATTTCTGGTGGTGACAACATTCAGGGCAAATGGAATAGGGACAATTTGTTGGAGATTCTTTATTGGAACAACAAAGAAGATACAAGATTCTGAGTTGATCGATACAACTGGTGCCAGGGATGCATTTATAGGAGCCATTATATTTTACCCAATTACAATTTTGTTATCCAGATCCGATCATAATTTGAAAAAGTGCAAGTCAATATGTTTTTTGGCTGAAGTGATGATTACTGGGGTGCAAGATGAGCTTAAAGGTTTTGAGATCAAGCACAGAGGTGTACTGAAGTTAATCAAAGTTTTCCAGGTTTCTAAGATCACAACTGAAGAGTGGAAAAACATGATAGAAAAACAAATGAGGCCCTATGAAGAGAAAATAAAATTGAACCGTCAGAAGAAGAAGCAAAACAAGGAAGATAAGAATTCTGATCCAAACAAGCCTAAGAGACCTCCATCTGTATTCCTCTTATTCAGTAAAGAAGTAAGGAAGAGTTTACAGGAGGAAAATCCAGGAATCAGTACCTCCAGCCTTAATGCACTTGTTTCGTTGAAGTGGAAGACAATTTCTTATAAGAAATTGCCTCAAATCTGCCAGAATGGTGCTTAG 735 0.3864 MVLFLRKLDLGLSTIMLQTRYKEVAEHAAESPRGILRTPDTVAKFLVVTTFRANGIGTICWRFFIGTTKKIQDSELIDTTGARDAFIGAIIFYPITILLSRSDHNLKKCKSICFLAEVMITGVQDELKGFEIKHRGVLKLIKVFQVSKITTEEWKNMIEKQMRPYEEKIKLNRQKKKQNKEDKNSDPNKPKRPPSVFLLFSKEVRKSLQEENPGISTSSLNALVSLKWKTISYKKLPQICQNGA* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03250 244 Pfam HMG (high mobility group) box 190 233 IPR009071 -
Rops11g03250 244 SUPERFAMILY HMG-box 178 233 IPR036910 -
Rops11g03250 244 Gene3D - 11 75 IPR012331 -
Rops11g03250 244 MobiDBLite consensus disorder prediction 168 189 - -
Rops11g03250 244 Gene3D High mobility group box domain 170 236 IPR036910 -
Rops11g03250 244 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 190 244 IPR009071 -
Rops11g03250 244 Pfam Clathrin-H-link 14 48 - -
Rops11g03250 244 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 168 234 IPR044601 GO:0003677
Rops11g03250 244 MobiDBLite consensus disorder prediction 168 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03250 Rops-Chr11 61919650 61923507 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Rops11g03250 HMG_box 3.4e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03250 K09273 - gmx:100783033 110.538