Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03247 ATGGAGCCACGAAAGCTTGTGGTCTTGGGCATCCCGTGGGACATTGATACGGAGGGCCTGAGAGAATACATGAGCAAATTTGGTGATCTGGAAGATTGTAGTGTTATGAGGGAAAGGTCAACTGGCCGGTCTCGTGGTTTTGGATATGTTACATTTGCATCAGTGGATGATGCTAAGAATGTATTATCCGGCGAACACGGTCTTGGTAGCAGGATGTCGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCACCGGTCAGAAAAGTTACCAGAATCTTTGTGGCCCGAAGTAACAGAAGCAACCTTTAG 315 0.4825 MEPRKLVVLGIPWDIDTEGLREYMSKFGDLEDCSVMRERSTGRSRGFGYVTFASVDDAKNVLSGEHGLGSRMSEVKVATPKEEMRAPVRKVTRIFVARSNRSNL* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03247 104 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Rops11g03247 104 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 67 IPR000504 GO:0003723
Rops11g03247 104 Gene3D - 1 99 IPR012677 -
Rops11g03247 104 PANTHER GEO13361P1-RELATED 3 83 - -
Rops11g03247 104 SUPERFAMILY RNA-binding domain, RBD 2 95 IPR035979 GO:0003676
Rops11g03247 104 SMART rrm1_1 5 76 IPR000504 GO:0003723
Rops11g03247 104 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03247 Rops-Chr11 61698572 61698886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03247 4 62 C2H2 Transcription Factor Family AT2G19380 35.593 2.96e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03247 K14411 - gmx:100795240 174.866