Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03240 ATGGATTTGAAGTCAAAATTTTCAGGTATGTTGCTCTCTTGGAGATCCTTGTTCCTGCGACCGTTTTGGGCCTCATCTCCCGATTTGAACCAGTTGGGCCAGGGAGATACAACTTCCAGTTCTTCCATGCATTCCGATAGCATCCAAAATTATAAATATGACGTGTTTATCAGCTTTAGAGGTCCTGACACTCGCAATACTTTTGTTGATCATCTTTACAATCATCTCATCAGAAAGGGTATTTTCACCTTCAAGGATGACACAAGGCTCCAGAAAGGGGAATCCATTTCACCCCAACTTCTACTAGCTATTAAAAGTTCACGGGTTTCTATTGTTGTCTTCTCAAAAACATATGCTCAATCAACATGGTGTTTGGATGAAATGGCTACTATTGCAGAATGCTGTCAAGAATTGAAACAAATTGTTTTTCCTGTTTTCTATGATGTGGATCCATCTCATGTACGAAACCAAAATGGGGTGTACAAGAATGCCTTTGTTTTACACACACAGAAATTCACAGGCAAGGTTGATCGATGGAAGAAAGCTATGAAGGGTTTGGCCGAATTAGTTGGTTGGGATGTCAGGAAAAACTTACGGTATCTTTTATGGCATGGTTACCCTTTTGCTTCTTTGCCAATAAACTTTGAGCCGTTTCGTCTTGTCGAATTGAATTTGTCTTATAGCAACATCCAACGACTATGGGAAGGTCGCAAGTTTGAGTACAACATGCTTGCTGACCATTGGTTGCTATTCCTCTCTTCACAGCATCTCCCCAATTTGAAAAGGGTGGATCTGAGCAACTCCAGATATCTTAGGGAGACACCAAATTTTGAAGGGAGCCGAAATATTGAGCGGCTAGATTTTACAGGATGCATAAAACTATCCTTGGTTCATCCTTCAATTGGATTTCTTGACAAACTAGCTTTCTTGAGTTTGGAAGGCTGTAGCAGTTTGGTCAGCCTTGATCTTGGCACTGCAGCTTATTTATATTCTCTCAAAGTTCTGCACCTCTCTGGCTGCACTGAACTTATTAGAATTACACCAGATTTTACAAGCGTCCCAAATCTTGAGTACCTCGATATTGATCAATGTATGAGTTTATCAGCGGTTGATGAATCAATTGGGTTTCTTACAAAGCTTAAATTCTTGAGTTTGAGAGACTGCACAAATCTCATGAGCATGCCCAAAAGCATTAATACCATGACTTCTCTTATGACTCTAGATTTATGCGGCTGCTTAGAACTTGAGAATATGCCCTTGCTGGGACATAAATTCGTGTCTTCTTACTATCTGGGTTCTTTGAATTTTTTGGATGTAAGCTTTTGCAATCTAAGTGAAGTCCCTGAAGCTATTGGATTGTTAAGGTGTTTAGAAAGGCTAAATCTAGAAGGAAACAACTTTGTTTCACTACCATCTTCCATGGGGCAGCTTTCCAAACTAGCATATTTAAACTTAGCACATTGCAGCAGACTTCAATCTTTGCCTGAGCTCCAATTCTGTGCAACTGCTTCATTAGGGGGAAGGTATTTTAAAACTGTATCTGGATCTCATCATCATAGGTCAGGATTATATATTTTCAACTGTCCATTCTTGAAGATCTCAGAAGAAGGTCAAAACTTGGCACTTCTATGGCTAGAAAGACTAATACAGAAACCTTGGCACTTCCGGTGTGGCTTTGACATTGTTGTTCCTGGGAACATAATTCCACAGTGGTTTGATCATCAATTTATGGGAGGTTCAAGAGTAAAGATAGGGAACTCTTTGTATGAGCATGAAAGTTGGCTTGGCTTTGCCTTTAGTGTGGCATTTGAGGAAAACTGTTGTCCATCAATGTCTGGTTCTCAACATTATTCATTTTCCTCACTGTTGCCATATCTTCTTTATCTTTCGTTTGAAAGTGAACATACGGAGGAAACCTTCCATTGGCCACTTCAGCTACATAACAAGGTTGATGGCTCAAATTCAGAACATCTTTGGCTAATCTATATCCCTCGGCCACACTGCCATTTTATGACTACAGGAGCATATATCACATTTAAAGCTCGCCCAGGTTTGGAAATAAAAAAATGGGGGTTACGCATGGTTTTCGAGCAAGATAACTTCAAACCATTGAAAAGTAGCAGCAGCTTTGGGCCTGAAACCCGGCTTACTAATAATTGGTTGCTAACTGACAATGTGCATGAAAGCAGCAACACATCTGGGTCTAAGTTCCAGCTTCCCTACAATTGGTATATTACTGAGGAAGAGAAAAGTGAGAAAATGGAAGTGAATGCCAAAAATACTAATCTATCTAATATGGGTTTATGTGATCTTCCTAATATGGACCTTTCCTCAGACCCCGGTGTATTACCTTACTCGAGGTAA 2364 0.4002 MDLKSKFSGMLLSWRSLFLRPFWASSPDLNQLGQGDTTSSSSMHSDSIQNYKYDVFISFRGPDTRNTFVDHLYNHLIRKGIFTFKDDTRLQKGESISPQLLLAIKSSRVSIVVFSKTYAQSTWCLDEMATIAECCQELKQIVFPVFYDVDPSHVRNQNGVYKNAFVLHTQKFTGKVDRWKKAMKGLAELVGWDVRKNLRYLLWHGYPFASLPINFEPFRLVELNLSYSNIQRLWEGRKFEYNMLADHWLLFLSSQHLPNLKRVDLSNSRYLRETPNFEGSRNIERLDFTGCIKLSLVHPSIGFLDKLAFLSLEGCSSLVSLDLGTAAYLYSLKVLHLSGCTELIRITPDFTSVPNLEYLDIDQCMSLSAVDESIGFLTKLKFLSLRDCTNLMSMPKSINTMTSLMTLDLCGCLELENMPLLGHKFVSSYYLGSLNFLDVSFCNLSEVPEAIGLLRCLERLNLEGNNFVSLPSSMGQLSKLAYLNLAHCSRLQSLPELQFCATASLGGRYFKTVSGSHHHRSGLYIFNCPFLKISEEGQNLALLWLERLIQKPWHFRCGFDIVVPGNIIPQWFDHQFMGGSRVKIGNSLYEHESWLGFAFSVAFEENCCPSMSGSQHYSFSSLLPYLLYLSFESEHTEETFHWPLQLHNKVDGSNSEHLWLIYIPRPHCHFMTTGAYITFKARPGLEIKKWGLRMVFEQDNFKPLKSSSSFGPETRLTNNWLLTDNVHESSNTSGSKFQLPYNWYITEEEKSEKMEVNAKNTNLSNMGLCDLPNMDLSSDPGVLPYSR* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03240 787 Gene3D Ribonuclease Inhibitor 198 427 IPR032675 -
Rops11g03240 787 SUPERFAMILY Toll/Interleukin receptor TIR domain 42 192 IPR035897 -
Rops11g03240 787 Pfam Leucine Rich Repeat 220 236 IPR011713 -
Rops11g03240 787 SMART till_3 52 189 IPR000157 GO:0007165
Rops11g03240 787 FunFam Disease resistance protein (TIR-NBS-LRR class) 49 199 - -
Rops11g03240 787 Gene3D - 47 197 IPR035897 -
Rops11g03240 787 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 196 321 IPR044974 GO:0006952
Rops11g03240 787 Pfam C-JID domain 563 699 IPR045344 -
Rops11g03240 787 Pfam TIR domain 52 185 IPR000157 GO:0007165
Rops11g03240 787 Gene3D Ribonuclease Inhibitor 428 548 IPR032675 -
Rops11g03240 787 SMART LRR_typ_2 454 477 IPR003591 -
Rops11g03240 787 SMART LRR_typ_2 431 453 IPR003591 -
Rops11g03240 787 SUPERFAMILY L domain-like 194 532 - -
Rops11g03240 787 ProSiteProfiles TIR domain profile. 51 210 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03240 Rops-Chr11 61510084 61514930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03240 325 496 WRKY Transcription Factor Family AT4G12020 34.104 8.72e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03240 - - psat:127091204 679.478