Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03217 ATGGGAAACTCTTGTGCAAAACCAGTTGCTCACGTGTCTTCCTCTAATATTGGCGGTTTAAGCTGTAGTTCATATGATGTAACTCTGAAAGATTATAGACTGTTCTATTTATATATTGTTATCAATTCCTCTGTAGTTCAGGTTGCAAACAAGTTGAACAATTTGGCATTTTTAAGGACAGTTTACCTGGAATTGATTAAAATCACTTCCATTTGTTTTCTTGTCAAGAGAAGTAAGAAGCCTCAAAGCAAGACAAAGCAGTATTCAAATTCTTCTGAACAAAAAGCTACTTTGCAAACTTCAGAACCAAATATGGACAAATCCATCTCCAATAAACTTAAGTCCTTCAGCTTGAATGATCTAAAGGAGGCCACTAGGAACTTCCGGCAAGAAAACTTAATTGGAGAGGGAGGGTTTGGGCGAATCTTCAAGGGATGGATTGATGGGAACACACATGCTCCCACAAAGCCAGGGAGTGGGATTGTAGTAGCCATTAAGAATCTTAAGCCAGAAAGTTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTAGGGCAGCTTCACCATGAAAATCTAGTGAAACTTATTGGCTATTGCTTGGAAGGTAAAAACAGGCTTCTAGTTTATGAGTTTATGCCAAAAGGAAGTCTGGAGAATCATTTATTCAGAAAAGGTGTTCAACCCATTGCTTGGGTCACACGTGTCAACATTGCAATTGGTGTTGCAAGAGGATTAACATTCTTACATTCCCTGAATGCAAATGTTATATTTCGTGATTTAAAGGCTTCTAATATCTTACTTGATTCGGATTTCAATGCAAAACTCTCGGATTTTGGTTTGGCAAGAGATGGTCCTACTGGAGATAATACTCATGTTTCAACCAGGGTTATTGGAACTCAAGGTTATGCTGCACCAGAGTATGTTGCTACAGGTCATTTGACACCAAGGAGTGATGTATACAGCTTTGGTGTTGTCTTGTTAGAGTTACTAACAGGAAGACGTGCACTAGAAGATGACAGACCTGGATTTTCAGAGGAAACTCTAGTGGATTGGGCAAAGCCCTTCTTAAGTGACAGCAGAAGAGTTTTGAGAATCATGGACACTAGGTTGGGTGGTCAATACTCCAAGAAAGGAGCACAAGCTGCAGCTGCACTTGCATTGCAATGTCTCAACACTGATCCCAAGTTTAGACCACCTATGGTAGAGGTTCTAGCAGCGTTGGAAGGGCTTCATTCCTTAAATACAATGCCAAGGACACCAAAATCCGGAACTGAGAGTCCTGCAACCAAGCATTTTGGTCATTCACAAAGATAA 1320 0.403 MGNSCAKPVAHVSSSNIGGLSCSSYDVTLKDYRLFYLYIVINSSVVQVANKLNNLAFLRTVYLELIKITSICFLVKRSKKPQSKTKQYSNSSEQKATLQTSEPNMDKSISNKLKSFSLNDLKEATRNFRQENLIGEGGFGRIFKGWIDGNTHAPTKPGSGIVVAIKNLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCLEGKNRLLVYEFMPKGSLENHLFRKGVQPIAWVTRVNIAIGVARGLTFLHSLNANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRALEDDRPGFSEETLVDWAKPFLSDSRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNTDPKFRPPMVEVLAALEGLHSLNTMPRTPKSGTESPATKHFGHSQR* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03217 439 Gene3D Phosphorylase Kinase; domain 1 101 213 - -
Rops11g03217 439 SUPERFAMILY Protein kinase-like (PK-like) 102 417 IPR011009 -
Rops11g03217 439 MobiDBLite consensus disorder prediction 417 439 - -
Rops11g03217 439 CDD STKc_IRAK 134 412 - -
Rops11g03217 439 PANTHER OS01G0588500 PROTEIN-RELATED 88 413 - -
Rops11g03217 439 Gene3D Transferase(Phosphotransferase) domain 1 214 425 - -
Rops11g03217 439 SMART serkin_6 128 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03217 439 FunFam Serine/threonine-protein kinase BIK1 94 213 - -
Rops11g03217 439 MobiDBLite consensus disorder prediction 415 439 - -
Rops11g03217 439 Pfam Protein tyrosine and serine/threonine kinase 131 407 IPR001245 GO:0004672|GO:0006468
Rops11g03217 439 ProSitePatterns Protein kinases ATP-binding region signature. 134 166 IPR017441 GO:0005524
Rops11g03217 439 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 214 423 - -
Rops11g03217 439 ProSiteProfiles Protein kinase domain profile. 128 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03217 439 MobiDBLite consensus disorder prediction 84 108 - -
Rops11g03217 439 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03217 Rops-Chr11 60895608 60899553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03217 72 409 Glycoside Hydrolase AT3G07070 46.369 7.10e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops11g03217 PK_Tyr_Ser-Thr 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03217 - - gmx:100800654 600.512