Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03215 ATGGCTATGGCAGCTCCAGGGCAACTCAACGTGAATGAATCCCCTTCTTGGGGATCCAGAAGCATTGATTGCTTCGAGAAGTTGGAGCAAATTGGCGAGGGCACATATGGTCAGGTTTACATGGCTAGAGAGATCAAAACTGGTGAAATCGTTGCTCTGAAGAAAATACGAATGGATAATGAGAGAGAAGGGTTTCCTATAACTGCTATACGTGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGGCCAGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCTGACCGACCTGGGATGAGATTTACAGTCCCCCAAATTAAGTGTTACATGAGACAGCTATTGACGGGGCTTCACTATTGTCACGTAAATCAAGTGCTTCATCGTGATATCAAGGGTTCAAATCTTCTTATAGATAATGAAGGTAATCTGAAACTTGCGGATTTTGGACTGGCACGATCATTTTCTAATGAGCACAATGCAAATCTTACAAACCGTGTGATCACATTATGGTACAGACCCCCTGAGTTGCTGCTAGGGACAACAAGGTATGGGCCAGCTGTAGATATGTGGTCTGTTGGGTGCATTTTTGCTGAGCTTCTTCACGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAGCAATTAAATAAGATTTTTGAGCTGTGTGGAGCACCAGATGAGGTTAACTGGCCTGGTGTTTCTAAAACTCCTTGGTATAATCAATTTAAGCCAACAAGACCAATGAAAAGGCGTCTGAGGGAAGTTTTCAGACATTTTGATCGTCATGCTTTGGAATTGTTGGAGAAGATGCTGACACTTGATCCTGCTCAGAGAATTACTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGACTGATCCATTACCATGTGACCCCAAGAGTTTACCCAAGTATGAGGCATCACATGAATTTCAAACCAAGAAAAAGCGCCAGCAGCAACGGCAAAATGAAGAAAATGCCAAGCGTCTTAAAATGCAGCATCCACAGCAGCATACTCGACTTCCCCCGATTCAGCAGGGTGGGCAACAACATGGCCAAATGCGGCAAGGTCCTAACCACCCAATTCATGGCTCCCAACCAGCAGTTGCTGCAGGACCTAGCCATCACTATGGGAAGCCTCGAGGTCCCTCCGGTGGGCCAGGAAGATATCCTCCTGGTGGGAACCCTGGCGGGGGATACAATCACCCGAGTCGTGGAGGTCAAGGAGGGGGTGGTGGTTATGGCAGTGGGCCATATCCTCCTCAAGGGCGGGGGGCACCTTACGGGTCTAGTGGTATGCCTGGTGGGCCTGGTGGTGGTCCTCGTGGCGGAGGTGGTAGTGGCTATGGTGTTGGAGCTCCAAATTATCCTCAAGGAGGTCCATATGGTGGGTCTGCAGCTGGTCGTGGCTCAAACATGATGGGTGGAAACCGTAACCAACAATATGGTTGGCAGCAGTAG 1563 0.4709 MAMAAPGQLNVNESPSWGSRSIDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQNEENAKRLKMQHPQQHTRLPPIQQGGQQHGQMRQGPNHPIHGSQPAVAAGPSHHYGKPRGPSGGPGRYPPGGNPGGGYNHPSRGGQGGGGGYGSGPYPPQGRGAPYGSSGMPGGPGGGPRGGGGSGYGVGAPNYPQGGPYGGSAAGRGSNMMGGNRNQQYGWQQ* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03215 520 MobiDBLite consensus disorder prediction 372 394 - -
Rops11g03215 520 FunFam Cyclin-dependent kinase C-2 12 121 - -
Rops11g03215 520 CDD STKc_CDK9_like 25 324 - -
Rops11g03215 520 SUPERFAMILY Protein kinase-like (PK-like) 19 332 IPR011009 -
Rops11g03215 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Rops11g03215 520 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Rops11g03215 520 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03215 520 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Rops11g03215 520 MobiDBLite consensus disorder prediction 335 520 - -
Rops11g03215 520 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03215 520 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03215 520 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Rops11g03215 520 FunFam Cyclin-dependent kinase C-2 122 364 - -
Rops11g03215 520 PANTHER CELL DIVISION PROTEIN KINASE 23 330 - -
Rops11g03215 520 MobiDBLite consensus disorder prediction 337 366 - -
Rops11g03215 520 MobiDBLite consensus disorder prediction 506 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03215 Rops-Chr11 60874030 60893777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03215 1 520 Core Cell Cycle Gene Families AT5G10270 77.524 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Rops11g03215 Pkinase 2.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03215 K08819 - gmx:100793565 927.161