Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03211 ATGTCCAAGGGTCGCCGGTCATCATTATCAGTTGATGAAGCTGGTGGTGGAGGAAACTCGGGAGGAGAAGGTCCTTTAAAGAAAGGCCCATGGACATCAGCAGAAGATGCAATTTTGGTAGACTATGTCAGAAAGCATGGAGAGGGAAATTGGAATGCAGTCCAGAAACATTCAGGACTTGCTCGCTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAGACCAGATCTAAAAAAAGGTGCATTTACTCCGGAGGAAGAGAACCGCATACTTGAGCTACATGCTAAGATGGGAAACAAGTGGGCTCGAATGGCCGCAGAGTTGCCTGGACGTACAGATAATGAGATAAAGAACTATTGGAACACAAGAATTAAGAGAATGCAACGAGCTGGCTTACCAATTTACCCTGATGAAATACGCCAACGGGTGTTTCATGGCAATCAAGAAAGTCTAAATGTCGGAACCTTGACAAATGAAGCCAGCCAGCATGATGATCTCTCAGGAACAGACAATTTCGATATTCCTGAATTGGAATTTAGAAAGTTCAAACTCCATCGGGGTTTATTATATGAACCGTCAATTTTTGATATACATGAAAGCAGCATGCTTGAACAAAGTTTGAACTCATCCCATGGTTATAATATGTTGTTGCCAATGATGCCTCCCTCAAAGCGCCTTCGGGAGTCAGATATGCTATACAATAGTTTGGACAGTTGTATCAGTAATGCCGTCCCAGTATTTGATCAGTATGGCAATTATAGTTGTGAAAATATTTCCGACCATACTAGGTTGTCTTCTCCATGTGATCCCATCCTTAACACTGGTGATCAGTTTCATGGTGATAACCTTACCGGCAGCCATGCCGCTTTAAATGGCAATAACTCTTCTTCTGTGCCCATATCCGGGGCCGTGAAGTTAGAGCTCCCTTCACTCCAATATTTAGAGACTCAGCAAGGTAGCTGGGGTTTGCCTGCATCCCCACTTCCTTCACTTGAGTCAGTTGATACATTGATTCAGTCTCCTCCGATTGAGCCAACTCAGTCAGATCCTGTTTCTCCACAGAGCAGTGGTTTGCTTGAAGCGATATTATACAATTCAAAGGCTTTGAAGGCCTCAAATATTGATTCATTGCAAGAAACAGCTGATAATTGTGTGCCCAATGAAGCAGTCAAGAGTTCAACCTTGAATCCCTGTAAGACAGAATGGGATGAACAAAGGGAGCCAAATTCCCCCTTAGGCCAGTCTGGTGCTTCAGCTCTGACTGATTATACTCCTATTAGCATGTGCTCAGTGGATGGCCCCCAATCAGTTGAAACCTCTCAGGATCATGATATTAAACATGAAGCAGTTACACAGTTCCCAGCTTACAATTCCAAGAAGAAAGAAAATTCGAATCAGATAGATTTTACCCGGCCTGATGCATTACTCGACTTAGGTTGGTTTGGGAATAGCTCTGAGTCTGGCAGTGATCAATCTGTTCTTAAAGATGCTTTAAGTGCACTTCTTGGTGAAGATTTCCAAGGAGGCAGGTGA 1539 0.4366 MSKGRRSSLSVDEAGGGGNSGGEGPLKKGPWTSAEDAILVDYVRKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFTPEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPDEIRQRVFHGNQESLNVGTLTNEASQHDDLSGTDNFDIPELEFRKFKLHRGLLYEPSIFDIHESSMLEQSLNSSHGYNMLLPMMPPSKRLRESDMLYNSLDSCISNAVPVFDQYGNYSCENISDHTRLSSPCDPILNTGDQFHGDNLTGSHAALNGNNSSSVPISGAVKLELPSLQYLETQQGSWGLPASPLPSLESVDTLIQSPPIEPTQSDPVSPQSSGLLEAILYNSKALKASNIDSLQETADNCVPNEAVKSSTLNPCKTEWDEQREPNSPLGQSGASALTDYTPISMCSVDGPQSVETSQDHDIKHEAVTQFPAYNSKKKENSNQIDFTRPDALLDLGWFGNSSESGSDQSVLKDALSALLGEDFQGGR* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03211 512 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Rops11g03211 512 MobiDBLite consensus disorder prediction 451 470 - -
Rops11g03211 512 CDD SANT 83 124 IPR001005 -
Rops11g03211 512 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Rops11g03211 512 SMART sant 27 77 IPR001005 -
Rops11g03211 512 SMART sant 80 128 IPR001005 -
Rops11g03211 512 FunFam MYB-related transcription factor 27 80 - -
Rops11g03211 512 FunFam Transcription factor GAMYB 83 129 - -
Rops11g03211 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Rops11g03211 512 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 15 500 - -
Rops11g03211 512 Gene3D - 83 152 - -
Rops11g03211 512 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Rops11g03211 512 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Rops11g03211 512 MobiDBLite consensus disorder prediction 1 31 - -
Rops11g03211 512 SUPERFAMILY Homeodomain-like 26 122 IPR009057 -
Rops11g03211 512 CDD SANT 30 75 IPR001005 -
Rops11g03211 512 Gene3D - 27 80 - -
Rops11g03211 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 75 IPR017930 -
Rops11g03211 512 MobiDBLite consensus disorder prediction 402 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03211 Rops-Chr11 60525463 60531643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03211 8 508 MYB Transcription Factor Family AT5G06100 41.346 1.40e-100 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g03211 Myb_DNA-binding 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03211 K09422 - gmx:100800658 743.036