Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03205 ATGAGAATGGCGTCCTCATCCTTGCGCCAGAAGGACTCGTGCATTACGACAACGCTTTCGGAGCCCCGAAGCACGAGCAAGGCTTCGTTTTCAGCACCGATTGTTATTGATGACTTGGTGGCTAAAGGTGGACCAATTCCTTCAACATTATCTCAGATTCCTAACTTGAAGATTCTAGACCTGGCACAAAATAATCTTAGTGGTGAGATACCAAGGCTTATATACTGGAATGAAGTTTTGCAGTATCTGGGCTTGAGAGGGAACAATTTGGTCGGTTCATTATCACCATACATGTGCCAGTTAACTGGGTTGTGGTACTTCCTCACAGGAAGTATTCCTGAAAACATAGGCAATTGTACCTCCTTCCAGGTCTTGGATTTATCTTACAACCAGTTAACTGGAGAGATACCATTCAACATTGGATTTCTGCAAGTAGCAACCTTGTCATTACAAGGCAATAAACTCTCTGGGCATATTCCATCAGTGATTGGGCTCATGCAAGCACTTGCTGTCTTAGACTTGAGTTGTAACATGTTAAGTGGGCCAATCCCTCCTATCTTGGGAAATTTGACTTACACAGAAAAATTGTACTTGCATGGAAACAAGCTGACTGGTTTCATTCCCCCAGAGCTTGGAAATATGACAAAGCTTCACTATTTCAATGTGCATGGGAATAAGCTGAATGGAACAATTCCTCCTGCTTTGCAGAGCTTGGAGAGTATGACATCTTTGAATCTTTCTTCCAACAATCTTCAAGGCTCTATTCCAATTGAACTGTCAAGGATTGGGAATTTGGATACACTGGATATTTCAAACAACAATCTAATTGGCTCCATCGCTTCTTCCCTTGGAGACTTGGAGCGTCTTCTGAAGCTGAATCTGAGCAGAAACCATTTAACAGGATTTATTCCAGCAGAGTTTGGTAATCTCAAAAGTGTCATGGAAATTGATCTTTCAAGTAATCAACTCTCTTGCTTGATTCCTGAAGAACTTAGTCAGCTTCATAACATAGTATCATTGAGGCTTGAAAACAACAAATTAACTGGGGATGTGGCATCACTTGTAAATTGTCTTAGTCTCTCTCAGCTTAATGTGTCTTTCAACAAATTAGTTGGTGATATTCCCACGAGCAACAACTTTACCAAGTTTCCCCCTGACAGCTTCATTGGAAACCCTGGTCTTTGTGGTAACTGGTTGAATTTGCCCTGTCATGGTTCTCACCCTACAGAGCGAGTTACATTATCCAAGGCAGCTATTCTAGGAATTACACTTGGTGCTCTTGTGATTCTTCTCATGATACTGTTGGCAGTTTGCCGACCGCACAATCCGTCTCCTTTTCCTGATGGATCACTTGACAAACCAGCGATTGAAATGGATGGTATTACTGAAACTGATTATACTAGGGATGAGATTTTTGTTCAGGACATGTCTCAATCAACCCCAACTTTGGAATTGATTATCAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCATGTAGACAATTGCTCACAACTGGATGGAGTTCTTTAATGACTTCAAAGAGATTTGTTGTTGGAGATTTGTTGCTCACATTGTAA 1599 0.4121 MRMASSSLRQKDSCITTTLSEPRSTSKASFSAPIVIDDLVAKGGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPYMCQLTGLWYFLTGSIPENIGNCTSFQVLDLSYNQLTGEIPFNIGFLQVATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYFNVHGNKLNGTIPPALQSLESMTSLNLSSNNLQGSIPIELSRIGNLDTLDISNNNLIGSIASSLGDLERLLKLNLSRNHLTGFIPAEFGNLKSVMEIDLSSNQLSCLIPEELSQLHNIVSLRLENNKLTGDVASLVNCLSLSQLNVSFNKLVGDIPTSNNFTKFPPDSFIGNPGLCGNWLNLPCHGSHPTERVTLSKAAILGITLGALVILLMILLAVCRPHNPSPFPDGSLDKPAIEMDGITETDYTRDEIFVQDMSQSTPTLELIIKDLHGYEWRFKHIFRGQPCRQLLTTGWSSLMTSKRFVVGDLLLTL* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03205 532 SUPERFAMILY DNA-binding pseudobarrel domain 474 530 IPR015300 -
Rops11g03205 532 PANTHER OS04G0122200 PROTEIN 187 441 - -
Rops11g03205 532 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 280 403 - -
Rops11g03205 532 Gene3D Ribonuclease Inhibitor 279 405 IPR032675 -
Rops11g03205 532 SMART LRR_typ_2 286 309 IPR003591 -
Rops11g03205 532 SMART LRR_typ_2 53 77 IPR003591 -
Rops11g03205 532 SMART LRR_typ_2 310 333 IPR003591 -
Rops11g03205 532 SMART LRR_typ_2 238 262 IPR003591 -
Rops11g03205 532 SMART LRR_typ_2 187 214 IPR003591 -
Rops11g03205 532 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 279 - -
Rops11g03205 532 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 77 181 - -
Rops11g03205 532 Gene3D - 457 532 IPR015300 -
Rops11g03205 532 ProSiteProfiles Leucine-rich repeat profile. 55 77 IPR001611 GO:0005515
Rops11g03205 532 Pfam B3 DNA binding domain 472 529 IPR003340 GO:0003677
Rops11g03205 532 Gene3D Ribonuclease Inhibitor 182 278 IPR032675 -
Rops11g03205 532 SUPERFAMILY L domain-like 43 391 - -
Rops11g03205 532 Gene3D Ribonuclease Inhibitor 41 181 IPR032675 -
Rops11g03205 532 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Rops11g03205 532 Pfam Leucine rich repeat 216 275 IPR001611 GO:0005515
Rops11g03205 532 ProSiteProfiles B3 DNA-binding domain profile. 484 532 IPR003340 GO:0003677
Rops11g03205 532 Pfam Leucine Rich repeat 54 69 IPR001611 GO:0005515
Rops11g03205 532 Pfam Leucine Rich repeat 118 135 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03205 Rops-Chr11 60355894 60361348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03205 44 454 Receptor kinase-like Gene Family AT5G07180 57.511 9.80e-163 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops11g03205 B3 8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03205 K20718 - sind:105155317 595.89