Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03202 ATGACTAGAAAGAAGGTGGAGCTTACATACATAAGCAATGACTCGAAGAGGAAGGCAGCACTCAAGAAAAGAAAAAATGGTTTGATCAAGAAGATTGATGAAATCAGCACCCTTTGTGGGATCGAGGCATGTGCTATAATCTATAATCCAAATGATCCTCAACCAGAGGTTTGGCCCTCTCCATGGGGAGTCGAAAGAGTGCTATCCAAGTTCAAGAGAATGCCTGGATTGGAACAAAACAAAAGGATGTTGAATCAAGAGAGCTTCTTGCAAGAAAGGATCCTAAAAGCCCAAGAGCAGCTGAAGAAACAAAAGAATGACAACAAAAAGAAAGAGATTATCAATATCATGTTTCAATACCTTAATGCTGGCCAAATTTCTGGCAATGTTAACATGATGGATCTCAATGATCTATCCTGGTTAATTGATCAGAACTTGAACGAAATTGACCGAAAGATTAATCAAATTCAAATCGTAGAGGCTGTTGAAGATGGAGCGAAAATTGTAAGTGGAGGAGGGCAAGAACACATGGGTCATAACCAAATGTTGGACACCATGCATGAGCAGAATTTGTGTGTGGATTTCATTAATGGTGGTGTGCTACCATTTGGACATTTTAATGTCCAAAATGACCATCGGCAAAATCCATGA 651 0.3948 MTRKKVELTYISNDSKRKAALKKRKNGLIKKIDEISTLCGIEACAIIYNPNDPQPEVWPSPWGVERVLSKFKRMPGLEQNKRMLNQESFLQERILKAQEQLKKQKNDNKKKEIINIMFQYLNAGQISGNVNMMDLNDLSWLIDQNLNEIDRKINQIQIVEAVEDGAKIVSGGGQEHMGHNQMLDTMHEQNLCVDFINGGVLPFGHFNVQNDHRQNP* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03202 216 Coils Coil 80 114 - -
Rops11g03202 216 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Rops11g03202 216 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Rops11g03202 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Rops11g03202 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Rops11g03202 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Rops11g03202 216 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Rops11g03202 216 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Rops11g03202 216 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Rops11g03202 216 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Rops11g03202 216 PANTHER MADS BOX PROTEIN 3 153 - -
Rops11g03202 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03202 Rops-Chr11 60256336 60257076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03202 1 153 Type I MADS-box Gene Family AT5G48670 54.248 5.92e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops11g03202 SRF-TF 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03202 - - gmx:100813231 229.95